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Summary[edit | edit source]

  • pan ID?: SAUPAN001893000
  • symbol?:
  • synonym:
  • description?: DUF3169 family protein

      descriptions from strain specific annotations:

    • DUF3169 family protein
    • hypothetical protein, DUF3169 superfamily
    • ABC transporter permease
  • strand?: +
  • coordinates?: 2380567..2381280
  • synteny block?: BlockID0012660
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0348
    08BA02176:
    C248_0405
    11819-97:
    MS7_0340
    6850:
    RSAU_000295
    71193:
    ST398NM01_0430
    ECT-R 2:
    ECTR2_311
    ED133:
    SAOV_0374
    ED98:
    SAAV_0318
    HO 5096 0412:
    SAEMRSA15_03050
    JH1:
    SaurJH1_0408
    JH9:
    SaurJH9_0398
    JKD6008:
    SAA6008_00327
    JKD6159:
    SAA6159_00324
    LGA251:
    SARLGA251_03120
    M013:
    M013TW_0329
    MRSA252:
    SAR0347
    MSHR1132:
    SAMSHR1132_03230
    MSSA476:
    SAS0326
    Mu3:
    SAHV_0347
    Mu50:
    SAV0350
    MW2:
    MW0326
    RF122:
    SAB0300
    ST398:
    SAPIG0430
    T0131:
    SAT0131_00357
    TCH60:
    HMPREF0772_10144
    TW20:
    SATW20_04180
    USA300_TCH1516:
    USA300HOU_0371
    VC40:
    SAVC_01500

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKILRYIGYLLLGGLVGGIIGGILGNFDGFGIENLTFATYNNVVVISIVATIIIILVEAI
    N315            MKILRYIGYLLLGGIVGGIIGGILGNFDGLGIENLTFATYNNVVVISIVATMIIILVEAI
    NCTC8325        MKILRYIGYLLLGGLVGGIIGGILGNFDGFGIENLTFATYNNVVVISIVATIIIILVEAI
    Newman          MKILRYIGYLLLGGLVGGIIGGILGNFDGFGIENLTFATYNNVVVISIVATIIIILVEAI
    USA300_FPR3757  MKILRYIGYLLLGGLVGGIIGGILGNFDGFGIENLTFATYNNVVVISIVATIIIILVEAI
                    **************:**************:*********************:********

    COL             VLMNQRRALKYKQLVDKEVDIDATDQYELLANRYVLNGSILSILQTVIAFLVLLIFVVGH
    N315            VLMNQRRALKYKRLVDEEVDIDATDQYELLANRYVLNGSILSVIQTIIAFVVLLIFVVGQ
    NCTC8325        VLMNQRRALKYKQLVDKEVDIDATDQYELLANRYVLNGSILSILQTVIAFLVLLIFVVGH
    Newman          VLMNQRRALKYKQLVDKEVDIDATDQYELLANRYVLNGSILSILQTVIAFLVLLIFVVGH
    USA300_FPR3757  VLMNQRRALKYKQLVDKEVDIDATDQYELLANRYVLNGSILSILQTVIAFLVLLIFVVGH
                    ************:***:*************************::**:***:********:

    COL             AAANAILFFLIPFFASAIFNTQFTLFNRRFDDRIPKIADKNYTEKRLEILDEGERHIELI
    N315            AEANAMLFFLIPFFASAIFNTQFTLFNRKFDDRMPKIADKNYTEKRLEILDEGERHIELI
    NCTC8325        AAANAILFFLIPFFASAIFNTQFTLFNRRFDDRIPKIADKNYTEKRLEILDEGERHIELI
    Newman          AAANAILFFLIPFFASAIFNTQFTLFNRRFDDRIPKIADKNYTEKRLEILDEGERHIELI
    USA300_FPR3757  AAANAILFFLIPFFASAIFNTQFTLFNRRFDDRIPKIADKNYTEKRLEILDEGERHIELI
                    * ***:**********************:****:**************************

    COL             ALFKTYAINLSILILAIVVIGLYSITTGINQSFSLLLIIAIFIYNAFSYLLKRRRFY
    N315            ALFKTYAINLSILILAIIFIGSYSIATGINQSFSLLLIIAIFIYNAFSYLLKRRRFY
    NCTC8325        ALFKTYAINLSILILAIVVIGLYSITTGINQSFSLLLIIAIFIYNAFSYLLKRRRFY
    Newman          ALFKTYAINLSILILAIVVIGLYSITTGINQSFSLLLIIAIFIYNAFSYLLKRRRFY
    USA300_FPR3757  ALFKTYAINLSILILAIVVIGLYSITTGINQSFSLLLIIAIFIYNAFSYLLKRRRFY
                    *****************:.** ***:*******************************