Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN001896000
- symbol?: —
- synonym:
- description?: low temperature requirement protein LtrA
- low temperature requirement protein LtrA
- Low temperature requirement protein A
- bacterial low temperature requirement A family protein
- bacterial low temperature requirement protein A
- low temperature requirement A protein (LtrA) family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2383336..2384412
- synteny block?: BlockID0012690
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0351
08BA02176:
C248_0408 (ltrA)
11819-97:
MS7_0343
6850:
RSAU_000298 (ltrA)
71193:
ST398NM01_0433
ECT-R 2:
ECTR2_314
ED133:
SAOV_0377c
ED98:
SAAV_0321
HO 5096 0412:
SAEMRSA15_03080
JH1:
SaurJH1_0411
JH9:
SaurJH9_0401
JKD6008:
SAA6008_00330 (ltrA)
JKD6159:
SAA6159_00327 (ltrA)
LGA251:
SARLGA251_03150
M013:
M013TW_0332
MRSA252:
SAR0350
MSHR1132:
SAMSHR1132_03260
MSSA476:
SAS0329
Mu3:
SAHV_0350
Mu50:
SAV0353
MW2:
MW0329
RF122:
SAB0303c
ST398:
SAPIG0433 (ltrA)
T0131:
SAT0131_00360
TCH60:
HMPREF0772_10141 (ltrA)
TW20:
SATW20_04210
USA300_TCH1516:
USA300HOU_0374
VC40:
SAVC_01515
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MVNALTPKHLAEKRAGFHELFFDLIFVYAIQKIAHVILTTQNGSISADLFFKYIVMSLFL
N315 MVNALTPKHLAEKRAGFHELFFDLIFVYAIQKIAHVILTTQNGSISADLFFKYIVMSLFL
NCTC8325 MVNALTPKHLAEKRAGFHELFFDLIFVYAIQKIAHVILTTQNGSISADLFFKYIVMSLFL
Newman MVNALTPKHLAEKRAGFHELFFDLIFVYAIQKIAHVILTTQNGSISADLFFKYIVMSLFL
USA300_FPR3757 MVNALTPKHLAEKRAGFHELFFDLIFVYAIQKIAHVILTTQNGSISADLFFKYIVMSLFL
************************************************************
COL WLMWSHQTFFTNRFGQVTFKDVSFMMFNMFIMVFLSNSLYPDFEKTFFPFFLCVAIMYLS
N315 WLMWSHQTFFTNRFGQVTFKDVSFMMFNMFIMVFLSNSLYPDFEKTFFPFFLCVAIMYLS
NCTC8325 WLMWSHQTFFTNRFGQVTFKDVSFMMFNMFIMVFLSNSLYPDFEKTFFPFFLCVAIMYLS
Newman WLMWSHQTFFTNRFGQVTFKDVSFMMFNMFIMVFLSNSLYPDFEKTFFPFFLCVAIMYLS
USA300_FPR3757 WLMWSHQTFFTNRFGQVTFKDVSFMMFNMFIMVFLSNSLYPDFEKTFFPFFLCVAIMYLS
************************************************************
COL IGLQYLLHIRTGLDYGDKRTCQAFASVAFVISFLSFLSLVLPQSIHYIPGFLGVFIAATG
N315 IGLQYLLHIRTGLDYGDKRTCQAFASVAFVISFLSFLSLVLPQSIHYIPGFLGVFIAATG
NCTC8325 IGLQYLLHIRTGLDYGDKRTCQAFASVAFVISFLSFLSLVLPQSIHYIPGFLGVFIAATG
Newman IGLQYLLHIRTGLDYGDKRTCQAFASVAFVISFLSFLSLVLPQSIHYIPGFLGVFIAATG
USA300_FPR3757 IGLQYLLHIRTGLDYGDKRTCQAFASVAFVISFLSFLSLVLPQSIHYIPGFLGVFIAATG
************************************************************
COL LIPFQKYLVLSPVNMMHLVERFSLLTIIIFGEVLVGLASSSFSIDHFSYIYIFQFMILIS
N315 LIPFQKYLVLSPVNMMHLVERFSLLTIIIFGEVLVGLASSSFSIDHFSYIYIFQFMILIS
NCTC8325 LIPFQKYLVLSPVNMMHLVERFSLLTIIIFGEVLVGLASSSFSIDHFSYIYIFQFMILIS
Newman LIPFQKYLVLSPVNMMHLVELFSLLTIIIFGEVLVGLASSSFSIDHFSYIYIFQFMILIS
USA300_FPR3757 LIPFQKYLVLSPVNMMHLVERFSLLTIIIFGEVLVGLASSSFSIDHFSYIYIFQFMILIS
******************** ***************************************
COL LFGVYWIITENYINHKLTSIGFRLSYTHLLINIALGVINAAIVFSNNNKLNDLFEINMMY
N315 LFGVYWIITENYINHKLSSIGFRLSYTHLLINIALGVINAAIVFSNNNKLNDLFEINMMY
NCTC8325 LFGVYWIITENYINHKLTSIGFRLSYTHLLINIALGVINAAIVFSNNNKLNDLFEINMMY
Newman LFGVYWIITENYINHKLTSIGFRLSYTHLLINIALGVINAAIVFSNNNKLNDLFEINMMY
USA300_FPR3757 LFGVYWIITENYINHKLTSIGFRLSYTHLLINIALGVINAAIVFSNNNKLNDLFEINMMY
*****************:******************************************
COL ISVLIFYIGLWLITPYFHNELTNAKYISYSLGILVMSYIVSLLFKGHDHVMIISVSVATF
N315 ISVLIFYIGLWLITPYFHNELTNAKYISSSLGILVVSYIISLIFKGHDQVMIISVSVATF
NCTC8325 ISVLIFYIGLWLITPYFHNELTNAKYISYSLGILVMSYIVSLLFKGHDHVMIISVSVATF
Newman ISVLIFYIGLWLITPYFHNELTNAKYISYSLGILVMSYIVSLLFKGHDHVMIISVSVATF
USA300_FPR3757 ISVLIFYIGLWLITPYFHNELTNAKYISYSLGILVMSYIVSLLFKGHDHVMIISVSVATF
**************************** ******:***:**:*****:***********
COL CIMLIYFKNQRLRNKHE
N315 CIMLIYFKNQRLRNKHE
NCTC8325 CIMLIYFKNQRLRNKHE
Newman CIMLIYFKNQRLRNKHE
USA300_FPR3757 CIMLIYFKNQRLRNKHE
*****************