PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001957000
• symbol^?: —
• synonym:
• description^?: CAAX amino protease

  descriptions from strain specific annotations:

  • CAAX amino protease
  • Abi-family protein
  • CAAX protease
  • abi-like family protein
  • putative abortive infection bacteriophage resistance protein
• strand^?: -
• coordinates^?: 2435883..2437677
• synteny block^?: BlockID0013100
• occurrence^?: in 79% of 33 strains

⊟Orthologs

COL:
SACOL0440
N315:
SA0355
NCTC8325:
SAOUHSC_00351
Newman:
NWMN_0360
USA300_FPR3757:
SAUSA300_0369
04-02981:
SA2981_0366
08BA02176:
—
11819-97:
—
6850:
RSAU_000313
71193:
—
ECT-R 2:
ECTR2_329
ED133:
—
ED98:
SAAV_0336
HO 5096 0412:
SAEMRSA15_03230
JH1:
SaurJH1_0427
JH9:
SaurJH9_0416
JKD6008:
SAA6008_00367
JKD6159:
SAA6159_00342
LGA251:
SARLGA251_03300
M013:
M013TW_0348
MRSA252:
—
MSHR1132:
SAMSHR1132_03410
MSSA476:
SAS0344
Mu3:
SAHV_0365
Mu50:
SAV0368
MW2:
MW0344
RF122:
SAB0319c
ST398:
—
T0131:
SAT0131_00399
TCH60:
—
TW20:
SATW20_04360
USA300_TCH1516:
USA300HOU_0390
VC40:
SAVC_01590

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ------------MLNFDEQIAKLKQMNIFFNIIDTEKANEILRKNNYFFKLAYFRKNFEK
  N315            MEKDDILAEIKPMLNFDEQIAKLKQMNIFFNIIDTEKANEILRKNNYFFKLAYFRKNFEK
  NCTC8325        ------------MLNFDEQIAKLKQMNIFFNIIDTEKANEILRKNNYFFKLAYFRKNFEK
  Newman          MEKDDTLAEIKPMLNFDEQIAKLKQMNIFFNIIDTEKANEILRKNNYFFKLAYFRKNFEK
  USA300_FPR3757  ------------MLNFDEQIAKLKQMNIFFNIIDTEKANEILRKNNYFFKLAYFRKNFEK
                              ************************************************
  
  COL             KNGGYFIEFAYLSDLATIDMKLRYTMLHLTLDIEHSLKYLVLKLITENNQEDGYKIIDEF
  N315            KNGGYFIEFAYLSDLATIDMKLRYTMLHLTLDIEHSLKCLVLKLITENNQEDGYKIIDEF
  NCTC8325        KNGGYFIEFAYLSDLATIDMKLRYTMLHLTLDIEHSLKYLVLKLITENNQEDGYKIIDEF
  Newman          KNGGYFIEFAYLSDLATIDMKLRYTMLHLTLDIEHSLKYLVLKLITENNQEDGYKIIDEF
  USA300_FPR3757  KNGGYFIEFAYLSDLATIDMKLRYTMLHLTLDIEHSLKYLVLKLITENNQEDGYKIIDEF
                  ************************************** *********************
  
  COL             LCIDKSYSNSNFDTNSRTPEEVMETKIKNKNEIFKHMNKRGQLPEKLNKYYQNPPAWVCI
  N315            LCIDKSYSNSNFDTNSRTPEEVMETKIKNKNEIFKHMNKRGQLPEKLNKYYQNPPAWVCI
  NCTC8325        LCIDKSYSNSNFDTNSRTPEEVMETKIKNKNEIFKHMNKRGQLPEKLNKYYQNPPAWVCI
  Newman          LCIDKSYSNSNFDTNSRTPEEVMETKIKNKNEIFKHMNKRGQLPEKLNKYYQNPPAWVCI
  USA300_FPR3757  LCIDKSYSNSNFDTNSRTPEEVMETKIKNKNEIFKHMNKRGQLPEKLNKYYQNPPAWVCI
                  ************************************************************
  
  COL             EFMQLGQFVSFLNFYYKKYNDEELRVANILMPLVKNIRNKSAHNQPIIANLNYDSRLPQY
  N315            EFMQLGQFVSFLNFYYKKYNDEELRVANILMPLVKNIRNKSAHNQPIIANLNYDSRSPQY
  NCTC8325        EFMQLGQFVSFLNFYYKKYNDEELRVANILMPLVKNIRNKSAHNQPIIANLNYDSRLPQY
  Newman          EFMQLGQFVSFLNFYYKKYNDEELRVANILMPLVKNIRNKSAHNQPIIANLNYDSRLPQY
  USA300_FPR3757  EFMQLGQFVSFLNFYYKKYNDEELRVANILMPLVKNIRNKSAHNQPIIANLNYDSRLPQY
                  ******************************************************** ***
  
  COL             LFEKGNNIGISRNMFGIKNFIDTFATLELHNQVCSNAIIQARYHDLDQLQKRYKRNESYY
  N315            LFEKGNNIGISRNMFGIKNFIDTFATLELHNQVCSNAIIQARYHDLDQLQKRYKRNESYY
  NCTC8325        LFEKGNNIGISRNMFGIKNFIDTFATLELHNQVCSNAIIQARYHDLDQLQKRYKRNESYY
  Newman          LFEKGNNIGISRNMFGIKNFIDTFATLELHNQVCSNAIIQARYHDLDQLQKRYKRNESYY
  USA300_FPR3757  LFEKGNNIGISRNMFGIKNFIDTFATLELHNQVCSNAIIQARYHDLDQLQKRYKRNESYY
                  ************************************************************
  
  COL             NNALAIKRFFIALDKIIDFNRPKV
  N315            NNALAIKRFFIALDKIIDFNRPKV
  NCTC8325        NNALAIKRFFIALDKIIDFNRPKV
  Newman          NNALAIKRFFIALDKIIDFNRPKV
  USA300_FPR3757  NNALAIKRFFIALDKIIDFNRPKV
                  ************************