PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002106000
• symbol^?: ssl2
• synonym:
• description^?: staphylococcal superantigen-like protein 2

  descriptions from strain specific annotations:

  • staphylococcal superantigen-like protein 2
  • superantigen-like protein
  • superantigen-like protein SSL2
  • exotoxin
  • Exotoxin 7
  • Staphylococcal enterotoxin-like toxin
  • staphylococcal exotoxin
  • superantigen-like protein 11
• strand^?: +
• coordinates^?: 2589781..2590497
• synteny block^?: BlockID0014120
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0469
N315:
SA0383 (set7)
NCTC8325:
SAOUHSC_00384
Newman:
NWMN_0389 (set2nm)
USA300_FPR3757:
SAUSA300_0396 (set7)
04-02981:
SA2981_0397 (set7)
08BA02176:
C248_0473
11819-97:
MS7_0398
6850:
RSAU_000353
71193:
ST398NM01_0491
ECT-R 2:
ECTR2_358
ED133:
SAOV_0441
ED98:
SAAV_0366
HO 5096 0412:
SAEMRSA15_03540
JH1:
SaurJH1_0458
JH9:
SaurJH9_0446
JKD6008:
SAA6008_00423 (set7)
JKD6159:
SAA6159_00376 (set7)
LGA251:
SARLGA251_03610
M013:
M013TW_0384
MRSA252:
SAR0423
MSHR1132:
SAMSHR1132_03730
MSSA476:
SAS0385
Mu3:
SAHV_0420 (set7)
Mu50:
SAV0423 (set7)
MW2:
MW0383 (set17)
RF122:
SAB0377 (set10)
ST398:
SAPIG0491
T0131:
SAT0131_00458
TCH60:
HMPREF0772_10094
TW20:
SATW20_04970
USA300_TCH1516:
USA300HOU_0423 (set1)
VC40:
SAVC_01740

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKMKNIAKISLLLGILATGVNTTTEKPVHAEKKPIVISENSKKLKAYYNQPSIEYKNVTG
  N315            MKMKNIAKISLLLGILATGVNTTTEKPVHAEKKPIVISENSKKLKAYYTQPSIEYKNVTG
  NCTC8325        MKMKNIAKISLLLGILATGVNTTTEKPVHAEKKPIVISENSKKLKAYYNQPSIEYKNVTG
  Newman          MKMKNIAKISLLLGILATGVNTTTEKPVHAEKKPIVISENSKKLKAYYNQPSIEYKNVTG
  USA300_FPR3757  MKMKNIAKISLLLGILATGVNTTTEKPVHAEKKPIVISENSKKLKAYYNQPSIEYKNVTG
                  ************************************************.***********
  
  COL             YISFIQPSIKFMNIIDGNSVNNIALIGKDKQHYHTGVHRNLNIFYVNEDKRFEGAKYSIG
  N315            YISFIQPSIKFMNIIDGNSVNNLALIGKDKQHYHTGVHRNLNIFYVNEDKRFEGAKYSIG
  NCTC8325        YISFIQPSIKFMNIIDGNSVNNIALIGKDKQHYHTGVHRNLNIFYVNEDKRFEGAKYSIG
  Newman          YISFIQPSIKFMNIIDGNSVNNIALIGKDKQHYHTGVHRNLNIFYVNEDKRFEGAKYSIG
  USA300_FPR3757  YISFIQPSIKFMNIIDGNSVNNIALIGKDKQHYHTGVHRNLNIFYVNEDKRFEGAKYSIG
                  **********************:*************************************
  
  COL             GITSANDKAVDLIAEARVIKEDHTGEYDYDFFPFKIDKEAMSLKEIDFKLRKYLIDNYGL
  N315            GITSANDKAVDLIAEARVIKADHIGEYDYDFFPFKIDKEAMSLKEIDFKLRKYLIDNYGL
  NCTC8325        GITSANDKAVDLIAEARVIKEDHTGEYDYDFFPFKIDKEAMSLKEIDFKLRKYLIDNYGL
  Newman          GITSANDKAVDLIAEARVIKEDHTGEYDYDFFPFKIDKEAMSLKEIDFKLRKYLIDNYGL
  USA300_FPR3757  GITSANDKAVDLIAEARVIKEDHTGEYDYDFFPFKIDKEAMSLKEIDFKLRKYLIDNYGL
                  ******************** ** ************************************
  
  COL             YGEMSTGKITVKKKYYGKYTFELDKKLQEDRMSDVINVTDIDRIEIKVIKA
  N315            YGEMSTGKITVKKKYYGKYTFELDKKLQEDRMSDVINVTDIDRIEIKVRKA
  NCTC8325        YGEMSTGKITVKKKYYGKYTFELDKKLQEDRMSDVINVTDIDRIEIKVIKA
  Newman          YGEMSTGKITVKKKYYGKYTFELDKKLQEDRMSDVINVTDIDRIEIKVIKA
  USA300_FPR3757  YGEMSTGKITVKKKYYGKYTFELDKKLQEDRMSDVINVTDIDRIEIKVIKA
                  ************************************************ **