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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002112000
- symbol?: ssl6
- synonym:
- description?: staphylococcal superantigen-like protein 6
- staphylococcal superantigen-like protein 6
- superantigen-like protein
- exotoxin
- pseudogene
- Staphylococcal enterotoxin-like toxin
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2598267..2598965
- synteny block?: BlockID0014180
- occurrence?: in 33% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_0446
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_00429
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0389
Mu3:
—
Mu50:
—
MW2:
MW0387 (set21)
RF122:
—
ST398:
—
T0131:
SAT0131_00465
TCH60:
—
TW20:
SATW20_05020
USA300_TCH1516:
USA300HOU_0428 (set21)
VC40:
SAVC_01760
⊟Genome Viewer[edit | edit source]
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
NCTC8325 MKLKTLAKATLVLGLLATGVITTESQTVKAAESTQGQHNYKSLKYYYSKPSIELKNLDGL
Newman MKLKTLAKATLVLGLLATGVITTESQTVKAAESTQGQHNYKSLKYYYSKPSIELKNLDGL
USA300_FPR3757 MKLKTLAKATLVLGLLATGVITTESQTVKAAESTQGQHNYKSLKYYYSKPSIELKNLDGL
************************************************************
NCTC8325 YRQKVTDKGVYVWKDRKDYFVGLLGKDIEKYPQGEHDKQDAFLVIEEETVNGRQYSIGGL
Newman YRQKVTDKGVYVWKDRKDYFVGLLGKDIEKYPQGEHDKQDAFLVIEEETVNGRQYSIGGL
USA300_FPR3757 YRQKVTDKGVYVWKDRKDYFVGLLGKDIEKYPQGEHDKQDAFLVIEEETVNGRQYSIGGL
************************************************************
NCTC8325 SKTNSKEFSKEVDVKVTRKIDESSEKSKDSKFKITKEEISLKELDFKLRKKLMEEEKLYG
Newman SKTNSKEFSKEVDVKVTRKIDESSEKSKDSKFKITKEEISLKELDFKLRKKLMEEEKLYG
USA300_FPR3757 SKTNSKEFSKEVDVKVTRKIDESSEKSKDSKFKITKEEISLKELDFKLRKKLMEEEKLYG
************************************************************
NCTC8325 AVNNRKGKIVVKMEDDKFYTFELTKKLQPHRMGDTIDGTKIKEINVELEYK
Newman AVNNRKGKIVVKMEDDKFYTFELTKKLQPHRMGDTIDGTKIKEINVELEYK
USA300_FPR3757 AVNNRKGKIVVKMEDDKFYTFELTKKLQPHRMGDTIDGTKIKEINVELEYK
***************************************************