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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002121000
- symbol?: hsdM1
- synonym:
- description?: type I restriction-modification system subunit M
- type I restriction-modification system subunit M
- type I restriction-modification system, M subunit
- type I restriction-modification system, methyltransferase subunit
- type I site-specific deoxyribonuclease LldI subunit HsdM
- Type I restriction-modification system, DNA-methyltransferase subunit M
- type I restriction modification system modification protein
- type I restriction enzyme modification protein
- type I restriction-modification system DNA-methyltransferase
- Type I restriction-modification system methylation subunit
- Type I restriction-modification system methyltransferase subunit
- type I site-specific deoxyribonuclease LldI chain
- type I site-specific deoxyribonuclease LldI chain hsdM
- type I site-specific deoxyribonuclease methyltransferase subunit
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2611715..2613271
- synteny block?: BlockID0014270
- occurrence?: in 94% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0407 (hsdM)
08BA02176:
C248_0482 (hsdM)
11819-97:
MS7_0406
6850:
RSAU_000360 (hsdM1)
71193:
ST398NM01_0499
ECT-R 2:
ECTR2_366 (hsdM)
ED133:
SAOV_0451
ED98:
SAAV_0374 (hsdM1)
HO 5096 0412:
SAEMRSA15_03610
JH1:
SaurJH1_0466
JH9:
SaurJH9_0454
JKD6008:
SAA6008_00434 (hsdM)
JKD6159:
—
LGA251:
SARLGA251_03690
M013:
M013TW_0392
MRSA252:
SAR0433
MSHR1132:
—
MSSA476:
SAS0394
Mu3:
SAHV_0429 (hsdM)
Mu50:
SAV0431 (hsdM)
MW2:
MW0392 (hsdM)
RF122:
SAB0384 (hsdM)
ST398:
SAPIG0499 (hsdM)
T0131:
SAT0131_00470
TCH60:
HMPREF0772_10086 (hsdM)
TW20:
SATW20_05080
USA300_TCH1516:
USA300HOU_0433 (hsdM1)
VC40:
SAVC_01785
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALS
N315 MSITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALS
NCTC8325 ----------------------------MDASEFRNYILGLIFYRFLSEKAEQEYADALS
Newman MSITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALS
USA300_FPR3757 MSITEKQRQQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALS
********************************
COL GEDITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHLATAIRK
N315 GEDITYQEAWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHLATAIRK
NCTC8325 GEDITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHLATAIRK
Newman GEDITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHLATAIRK
USA300_FPR3757 GEDITYQEAWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHLATAIRK
*********************************:**************************
COL VETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDM
N315 VETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDM
NCTC8325 VETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDM
Newman VETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDM
USA300_FPR3757 VETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDM
************************************************************
COL LGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKLRHVYDPTCGSGSLLLR
N315 LGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKLRHVYDPTCGSGSLLLR
NCTC8325 LGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKLRHVYDPTCGSGSLLLR
Newman LGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKLRHVYDPTCGSGSLLLR
USA300_FPR3757 LGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKLRHVYDPTCGSGSLLLR
************************************************************
COL VGKETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFDIRNDDTLENPAFLGNTFDAVIA
N315 VGKETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFDIRNDDTLENPAFLGNTFDAVIA
NCTC8325 VGKETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFDIRNDDTLENPAFLGNTFDAVIA
Newman VGKETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFDIRNDDTLENPAFLGNTFDAVIA
USA300_FPR3757 VGKETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFDIRNDDTLENPAFLGNTFDAVIA
************************************************************
COL NPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDDEGTMAVVLPHGVLF
N315 NPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDDEGTMAVVLPHGVLF
NCTC8325 NPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDDEGTMAVVLPHGVLF
Newman NPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDDEGTMAVVLPHGVLF
USA300_FPR3757 NPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDDEGTMAVVLPHGVLF
************************************************************
COL RGAAEGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVFKKCRQQDDNVLFIDASND
N315 RGAAEGVIRRYLIEEKNYLEAVIGLPVNIFYGTSIPTCILVFKKCRQQDDNVLFIDASND
NCTC8325 RGAAEGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVFKKCRQQDDNVLFIDASND
Newman RGAAEGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVFKKCRQQDDNVLFIDASND
USA300_FPR3757 RGAAEGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVFKKCRQQDDNVLFIDASND
**************************.*********************************
COL FEKGKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEA
N315 FEKGKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEA
NCTC8325 FEKGKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEA
Newman FEKGKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEA
USA300_FPR3757 FEKGKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEA
************************************************************
COL PIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKDE
N315 PIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKDE
NCTC8325 PIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKDE
Newman PIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKDE
USA300_FPR3757 PIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKDE
**************************************