PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002162000
• symbol^?: psmα1
• synonym: psmA1
• description^?: Phenol-soluble modulin alpha 1 peptide

  descriptions from strain specific annotations:

  • Phenol-soluble modulin alpha 1 peptide
  • phenol-soluble modulin alpha 1
  • phenol-soluble modulin PSM-alpha-1
  • cytosolic toxin PSM alpha1
• strand^?: -
• coordinates^?: 2667398..2667463
• synteny block^?: BlockID0014630
• occurrence^?: in 30% of 33 strains

⊟Orthologs

COL:
SACOL0493.4 (psmα1)
N315:
SA0410.5 (psmα1)
NCTC8325:
SAOUHSC_00411.4 (psmα1)
Newman:
NWMN_0417.4 (psmα1)
USA300_FPR3757:
SAUSA300_0424.4 (psmα1)
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
RSAU_000384 (psmA1)
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_09903
JKD6159:
SAA6159_02611
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
SAMSHR1132_03964
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_05204
USA300_TCH1516:
—
VC40:
—

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MGIIAGIIKVIKSLIEQFTGK
  N315            MGIIAGIIKVIKSLIEQFTGK
  NCTC8325        MGIIAGIIKVIKSLIEQFTGK
  Newman          MGIIAGIIKVIKSLIEQFTGK
  USA300_FPR3757  MGIIAGIIKVIKSLIEQFTGK
                  *********************