PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002228000
• symbol^?: —
• synonym:
• description^?: TatD family deoxyribonuclease

  descriptions from strain specific annotations:

  • TatD family deoxyribonuclease
  • TatD family hydrolase
  • TatD related DNase
  • TatD-related Mg-dependent DNase, putative
  • deoxyribonuclease
  • Hydrolase, TatD family
  • metallo-dependent hydrolase
  • Mg-dependent DNase
  • Putative deoxyribonuclease YcfH
  • putative TatD related DNase
  • sec-independent hydrolase
  • TatD family Dnase
• strand^?: +
• coordinates^?: 2738393..2739166
• synteny block^?: BlockID0015270
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0534
N315:
SA0449
NCTC8325:
SAOUHSC_00462
Newman:
NWMN_0454
USA300_FPR3757:
SAUSA300_0468
04-02981:
SA2981_0466 (ycfH)
08BA02176:
C248_0546
11819-97:
MS7_0468
6850:
RSAU_000428 (tatD)
71193:
ST398NM01_0557
ECT-R 2:
ECTR2_431
ED133:
SAOV_0513
ED98:
SAAV_0438
HO 5096 0412:
SAEMRSA15_04170
JH1:
SaurJH1_0525
JH9:
SaurJH9_0512
JKD6008:
SAA6008_00495 (tatP)
JKD6159:
SAA6159_00442 (tatP)
LGA251:
SARLGA251_04250
M013:
M013TW_0460
MRSA252:
SAR0492
MSHR1132:
SAMSHR1132_04350
MSSA476:
SAS0448
Mu3:
SAHV_0488
Mu50:
SAV0491
MW2:
MW0446
RF122:
SAB0440
ST398:
SAPIG0557
T0131:
SAT0131_00536
TCH60:
HMPREF0772_10029
TW20:
SATW20_05590
USA300_TCH1516:
USA300HOU_0491
VC40:
SAVC_02040

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
  N315            MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
  NCTC8325        MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
  Newman          MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
  USA300_FPR3757  MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGII
                  ************************************************************
  
  COL             GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
  N315            GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
  NCTC8325        GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
  Newman          GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
  USA300_FPR3757  GWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR
                  ************************************************************
  
  COL             LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
  N315            LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
  NCTC8325        LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
  Newman          LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
  USA300_FPR3757  LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT
                  ************************************************************
  
  COL             FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
  N315            FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
  NCTC8325        FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
  Newman          FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
  USA300_FPR3757  FKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEE
                  ************************************************************
  
  COL             VCEQTTKNAEKLFNLNS
  N315            VCEQTTKNAEKLFNLNS
  NCTC8325        VCEQTTKNAEKLFNLNS
  Newman          VCEQTTKNAEKLFNLNS
  USA300_FPR3757  VCEQTTKNAEKLFNLNS
                  *****************