PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002242000
• symbol^?: rplY
• synonym:
• description^?: 50S ribosomal protein L25/general stress protein Ctc

  descriptions from strain specific annotations:

  • 50S ribosomal protein L25/general stress protein Ctc
  • 50S ribosomal protein L25
  • 50S ribosomal protein L25 Ctc-form
  • 50S ribosomalprotein L25p
  • putative 50S ribosomal protein L25
  • ribosomal Protein L25
  • ribosomal protein L25, Ctc-form
• strand^?: +
• coordinates^?: 2747986..2748651
• synteny block^?: BlockID0015410
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0545 (rplY)
N315:
SA0459 (rplY)
NCTC8325:
SAOUHSC_00474
Newman:
NWMN_0464 (rplY)
USA300_FPR3757:
SAUSA300_0479
04-02981:
SA2981_0476 (rplY)
08BA02176:
C248_0556 (rplY)
11819-97:
MS7_0478
6850:
RSAU_000440 (rplY)
71193:
ST398NM01_0567
ECT-R 2:
ECTR2_441
ED133:
SAOV_0523
ED98:
SAAV_0448 (rplY)
HO 5096 0412:
SAEMRSA15_04270 (rplY)
JH1:
SaurJH1_0536
JH9:
SaurJH9_0523
JKD6008:
SAA6008_00506 (rplY)
JKD6159:
SAA6159_00452 (rplY)
LGA251:
SARLGA251_04350 (rplY)
M013:
M013TW_0473
MRSA252:
SAR0502 (rplY)
MSHR1132:
SAMSHR1132_04450
MSSA476:
SAS0458
Mu3:
SAHV_0498 (rplY)
Mu50:
SAV0501 (rplY)
MW2:
MW0456 (rplY)
RF122:
SAB0450 (prs)
ST398:
SAPIG0567
T0131:
SAT0131_00547
TCH60:
HMPREF0772_10018 (rplY)
TW20:
SATW20_05690 (rplY)
USA300_TCH1516:
USA300HOU_0495 (rplY)
VC40:
SAVC_02090

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGV
  N315            MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGV
  NCTC8325        MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGV
  Newman          MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGV
  USA300_FPR3757  MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGV
                  ************************************************************
  
  COL             IELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGV
  N315            IELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGV
  NCTC8325        IELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGV
  Newman          IELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGV
  USA300_FPR3757  IELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGV
                  ************************************************************
  
  COL             VEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVA
  N315            VEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVA
  NCTC8325        VEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVA
  Newman          VEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVA
  USA300_FPR3757  VEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVA
                  ************************************************************
  
  COL             PTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
  N315            PTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
  NCTC8325        PTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
  Newman          PTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
  USA300_FPR3757  PTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
                  *************************************