⊟Summary[edit | edit source]

pan ID^?: SAUPAN002337000
symbol^?: sdrE
synonym:
description^?: MSCRAMM family adhesin SdrE
- MSCRAMM family adhesin SdrE
- sdrE protein
- Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE
- Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein
- Serine-aspartate repeat-containing protein E
- cell wall anchor domain-containing protein
- Fibronectin-binding protein
- LPXTG-motif cell wall anchor domain-containing protein
- Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein Bbp
- Ser-Asp rich fibrinogen-binding/bone sialoprotein-binding protein
- Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein
strand^?: +
coordinates^?: 2867235..2876151
synteny block^?: BlockID0016360
occurrence^?: in 88% of 33 strains

⊟Orthologs[edit | edit source]

COL:

SACOL0610 (sdrE)

N315:

SA0521 (sdrE)

NCTC8325:

—

Newman:

NWMN_0525 (sdrE)

USA300_FPR3757:

SAUSA300_0548 (sdrE)

04-02981:

SA2981_0540 (sdrE)

08BA02176:

C248_0638 (bbp)

11819-97:

MS7_0553 (sdrE)

6850:

RSAU_000517 (sdrE)

71193:

ST398NM01_2827

ECT-R 2:

ECTR2_517

ED133:

SAOV_0598 (sdrE)

ED98:

SAAV_0526 (sdrE)

HO 5096 0412:

SAEMRSA15_04900 (sdrE)

JH1:

SaurJH1_0600

JH9:

SaurJH9_0586

JKD6008:

SAA6008_00571

JKD6159:

SAA6159_00517 (sdrE)

LGA251:

SARLGA251_04990 (sdrE)

M013:

M013TW_0550

MRSA252:

SAR0567 (bbp)

MSHR1132:

—

MSSA476:

SAS0521

Mu3:

SAHV_0561 (sdrE)

Mu50:

SAV0563 (sdrE)

MW2:

MW0518 (sdrE)

RF122:

SAB0513

ST398:

—

T0131:

SAT0131_00623

TCH60:

HMPREF0772_12626

TW20:

SATW20_06330 (sdrE)

USA300_TCH1516:

USA300HOU_0557 (sdrE)

VC40:

—

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             MINRDNKKAITKKGMISNRLNKFSIRKYTVGTASILVGTTLIFGLGNQEAKAAENTSTEN
N315            MINRDNKKAITKKGMISNRLNKFSIRKYTVGTASILVGTTLIFGLGNQEAKAAENTSTEN
Newman          MINRDNKKAITKKGMISNRLNKFSIRKYTVGTASILVGTTLIFGLGNQEAKAAENTSTEN
USA300_FPR3757  MINRDNKKAITKKGMISNRLNKFSIRKYTVGTASILVGTTLIFGLGNQEAKAAENTSTEN
                ************************************************************

COL             AKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNV
N315            AKQDDATTSDNKEVVSETENNSTTENDSTNPIKKETNTDSQPEAKEESTTSSTQQQQNNV
Newman          AKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNV
USA300_FPR3757  AKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNV
                **************************:******************:***:****:*****

COL             TATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQ
N315            TATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNYTNNDVTTK-----PSTSEIQ
Newman          TATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQ
USA300_FPR3757  TATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQ
                *************************************** ********     *******

COL             TKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKKNPEKLKELVRNDS
N315            TKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDN
Newman          TKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDS
USA300_FPR3757  TKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDS
                **********************************************:************.

COL             NTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVGDGKDNV
N315            NTDRSTKPVATAPTSVAPKRLNAKMRFAVAQPAAVASNNVNDLITVTKQTIKVGDGKDNV
Newman          NTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVGDGKDNV
USA300_FPR3757  NTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVGDGKDNV
                ***:****************:***********************.***************

COL             AAAHDGKDIEYDTEFTIDNKVKKGDTMTINYDKNVIPSDLTDKNDPIDITDPSGEVIAKG
N315            AAAHDGKDIEYDTEFTIDNKVKKGDTMTINYDKNVIPSDLTDKNDPIDITDPSGEVIAKG
Newman          AAAHDGKDIEYDTEFTIDNKVKKGDTMTINYDKNVIPSDLTDKNDPIDITDPSGEVIAKG
USA300_FPR3757  AAAHDGKDIEYDTEFTIDNKVKKGDTMTINYDKNVIPSDLTDKNDPIDITDPSGEVIAKG
                ************************************************************

COL             TFDKATKQITYTFTDYVDKYEDIKSRLTLYSYIDKKTVPNETSLNLTFATAGKETSQNVT
N315            TFDKATKQITYTFTDYVDKYEDIKARLTLYSYIDKQAVPNETSLNLTFATAGKETSQNVS
Newman          TFDKATKQITYTFTDYVDKYEDIKSRLTLYSYIDKKTVPNETSLNLTFATAGKETSQNVT
USA300_FPR3757  TFDKATKQITYTFTDYVDKYEDIKSRLTLYSYIDKKTVPNETSLNLTFATAGKETSQNVT
                ************************:**********::**********************:

COL             VDYQDPMVHGDSNIQSIFTKLDEDKQTIEQQIYVNPLKKSATNTKVDIAGSQVDDYGNIK
N315            VDYQDPMVHGDSNIQSIFTKLDENKQTIEQQIYVNPLKKTATNTKVDIAGSQVDDYGNIK
Newman          VDYQDPMVHGDSNIQSIFTKLDEDKQTIEQQIYVNPLKKSATNTKVDIAGSQVDDYGNIK
USA300_FPR3757  VDYQDPMVHGDSNIQSIFTKLDEDKQTIEQQIYVNPLKKSATNTKVDIAGSQVDDYGNIK
                ***********************:***************:********************

COL             LGNGSTIIDQNTEIKVYKVNSDQQLPQSNRIYDFSQYEDVTSQFDNKKSFSNNVATLDFG
N315            LGNGSTIIDQNTEIKVYKVNPNQQLPQSNRIYDFSQYEDVTSQFDNKKSFSNNVATLDFG
Newman          LGNGSTIIDQNTEIKVYKVNSDQQLPQSNRIYDFSQYEDVTSQFDNKKSFSNNVATLDFG
USA300_FPR3757  LGNGSTIIDQNTEIKVYKVNSDQQLPQSNRIYDFSQYEDVTSQFDNKKSFSNNVATLDFG
                ********************.:**************************************

COL             DINSAYIIKVVSKYTPTSDGELDIAQGTSMRTTDKYGYYNYAGYSNFIVTSNDTGGGDGT
N315            DINSAYIIKVVSKYTPTSDGELDIAQGTSMRTTDKYGYYNYAGYSNFIVTSNDTGGGDGT
Newman          DINSAYIIKVVSKYTPTSDGELDIAQGTSMRTTDKYGYYNYAGYSNFIVTSNDTGGGDGT
USA300_FPR3757  DINSAYIIKVVSKYTPTSDGELDIAQGTSMRTTDKYGYYNYAGYSNFIVTSNDTGGGDGT
                ************************************************************

COL             VKPEEKLYKIGDYVWEDVDKDGVQGTDSKEKPMANVLVTLTYPDGTTKSVRTDANGHYEF
N315            VKPEEKLYKIGDYVWEDVDKDGVQGTDSKEKPMANVLVTLTYPDGTTKSVRTDANGHYEF
Newman          VKPEEKLYKIGDYVWEDVDKDGVQGTDSKEKPMANVLVTLTYPDGTTKSVRTDANGHYEF
USA300_FPR3757  VKPEEKLYKIGDYVWEDVDKDGVQGTDSKEKPMANVLVTLTYPDGTTKSVRTDANGHYEF
                ************************************************************

COL             GGLKDGETYTVKFETPTGYLPTKVNGTTDGEKDSNGSSVTVKINGKDDMSLDTGFYKEPK
N315            GGLKDGETYTVKFETPAGYLPTKVNGTTDGEKDSNGSSITVKINGKDDMSLDTGFYKEPK
Newman          GGLKDGETYTVKFETPTGYLPTKVNGTTDGEKDSNGSSVTVKINGKDDMSLDTGFYKEPK
USA300_FPR3757  GGLKDGETYTVKFETPTGYLPTKVNGTTDGEKDSNGSSVTVKINGKDDMSLDTGFYKEPK
                ****************:*********************:*********************

COL             YNLGDYVWEDTNKDGIQDANEPGIKDVKVTLKDSTGKVIGTTTTDASGKYKFTDLDNGNY
N315            YNLGDYVWEDTNKDGIQDANEPGIKDVKVTLKDSTGKVIGTTTTDASGKYKFTDLDNGNY
Newman          YNLGDYVWEDTNKDGIQDANEPGIKDVKVTLKDSTGKVIGTTTTDASGKYKFTDLDNGNY
USA300_FPR3757  YNLGDYVWEDTNKDGIQDANEPGIKDVKVTLKDSTGKVIGTTTTDASGKYKFTDLDNGNY
                ************************************************************

COL             TVEFETPAGYTPTVKNTTADDKDSNGLTTTGVIKDADNMTLDRGFYKTPKYSLGDYVWYD
N315            TVEFETPAGYTPTVKNTTAEDKDSNGLTTTGVIKDADNMTLDSGFYKTPKYSLGDYVWYD
Newman          TVEFETPAGYTPTVKNTTADDKDSNGLTTTGVIKDADNMTLDRGFYKTPKYSLGDYVWYD
USA300_FPR3757  TVEFETPAGYTPTVKNTTADDKDSNGLTTTGVIKDADNMTLDSGFYKTPKYSLGDYVWYD
                *******************:********************** *****************

COL             SNKDGKQDSTEKGIKDVTVTLQNEKGEVIGTTKTDENGKYRFDNLDSGKYKVIFEKPAGL
N315            SNKDGKQDSTEKGIKDVKVTLLNEKGEVIGTTKTDENGKYRFDNLDSGKYKVIFEKPAGL
Newman          SNKDGKQDSTEKGIKDVTVTLQNEKGEVIGTTKTDENGKYRFDNLDSGKYKVIFEKPAGL
USA300_FPR3757  SNKDGKQDSTEKGIKDVTVTLQNEKGEVIGTTKTDENGKYRFDNLDSGKYKVIFEKPAGL
                *****************.*** **************************************

COL             TQTVTNTTEDDKDADGGEVDVTITDHDDFTLDNGYFEEDTSDSDSDSDSDSDSDSDSDSD
N315            TQTVTNTTEDDKDADGGEVDVTITDHDDFTLDNGYFEEDT--------------------
Newman          TQTVTNTTEDDKDADGGEVDVTITDHDDFTLDNGYFEEDTSDSDSDSDSDSDSDSDSDSD
USA300_FPR3757  TQTVTNTTEDDKDADGGEVDVTITDHDDFTLDNGYFEEDT------------SDSDSDSD
                ****************************************

COL             SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
N315            SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
Newman          SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
USA300_FPR3757  SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
                ************************************************************

COL             SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
N315            SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
Newman          SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
USA300_FPR3757  SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD
                ************************************************************

COL             SDSDSDSDSDSDSDSDSDSDSDSDSDAGKHTPVKPMSTTKDHHNKAKALPETGSENNGSN
N315            SDSDSDSDSDSDSDSDSDSDSDSDSDAGKHTPVKPMSTTKDHHNKAKALPETGSENNGSN
Newman          SDSDSDSDSDSDSDSDSDSDSDSDSDAGKHTPVKPMSTTKDHHNKAKALPETGSENNGSN
USA300_FPR3757  SDSDSDSDSDSDSDSDSDSDSDSDSDAGKHTPVKPMSTTKDHHNKAKALPETGSENNGSN
                ************************************************************

COL             NATLFGGLFAALGSLLLFGRRKKQNK
N315            NATLFGGLFAALGSLLLFGRRKKQNK
Newman          NATLFGGLFAALGSLLLFGRRKKQNK
USA300_FPR3757  NATLFGGLFAALGSLLLFGRRKKQNK
                **************************

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Contents

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

COL
N315
Newman
USA300_FPR3757

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⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]