PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002444000
• symbol^?: —
• synonym:
• description^?: DUF443 domain-containing protein

  descriptions from strain specific annotations:

  • DUF443 domain-containing protein
  • membrane spanning protein
  • staphylococcus aureus paralogous family
• strand^?: +
• coordinates^?: 2961037..2964634
• synteny block^?: BlockID0016820
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
SACOL0653
N315:
—
NCTC8325:
SAOUHSC_00599
Newman:
NWMN_0570
USA300_FPR3757:
SAUSA300_0587
04-02981:
—
08BA02176:
C248_0681
11819-97:
—
6850:
—
71193:
ST398NM01_0672
ECT-R 2:
—
ED133:
SAOV_0632
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_00615
JKD6159:
SAA6159_00551
LGA251:
—
M013:
—
MRSA252:
SAR0603
MSHR1132:
—
MSSA476:
SAS0566
Mu3:
—
Mu50:
—
MW2:
MW0561
RF122:
—
ST398:
SAPIG0678
T0131:
—
TCH60:
HMPREF0772_12590
TW20:
SATW20_06750
USA300_TCH1516:
USA300HOU_0603
VC40:
SAVC_02625

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLCESKVINKNPKYRVIKYGDEYLMIDLVSTWLTLFLPMINWLIPKKYVKISKKEFDDLN
  NCTC8325        MLCESKVINKNPKYRVIKYGDEYLMIDLVSTWLTLFLPMINWLIPKKYVKISKKEFDDLN
  Newman          MLCESKVINKNPKYRVIKYGDEYLMIDLVSTWLTLFLPMINWLIPKKYVKISKKEFDDLN
  USA300_FPR3757  MLCESKVINKNPKYRVIKYGDEYLMIDLVSTWLTLFLPMINWLIPKKYVKISKKEFDDLN
                  ************************************************************
  
  COL             IVKPVKNKAFWPVAGSTILFGVTFRKYIPSLNIQLEKNMVIVICCAIFLGVLILFLFLNR
  NCTC8325        IVKPVKNKAFWPVAGSTILFGVTFRKYIPSLNIQLEKNMVIVICCAIFLGVLILFLFLNR
  Newman          IVKPVKNKAFWPVAGSTILFGVTFRKYIPSLNIQLEKNMVIVICCAIFLGVLILFLFLNR
  USA300_FPR3757  IVKPVKNKAFWPVAGSTILFGVTFRKYIPSLNIQLEKNMVIVICCAIFLGVLILFLFLNR
                  ************************************************************
  
  COL             KLRLEIYNNNSSKGKIILFPSLKNFCFTIFYYFLFGGLSIMALSMLLTLNPQNIIGFIGW
  NCTC8325        KLRLEIYNNNSSKGKIILFPSLKNFCFTIFYYFLFGGLSIMALSMLLTLNPQNIIGFIGW
  Newman          KLRLEIYNNNSSKGKIILFPSLKNFCFTIFYYFLFGGLSIMALSMLLTLNPQNIIGFIGW
  USA300_FPR3757  KLRLEIYNNNSSKGKIILFPSLKNFCFTIFYYFLFGGLSIMALSMLLTLNPQNIIGFIGW
                  ************************************************************
  
  COL             LVMTAGFFLLNMSSIIDKKIYVLSKTNTVEK
  NCTC8325        LVMTAGFFLLNMSSIIDKKIYVLSKTNTVEK
  Newman          LVMTAGFFLLNMSSIIDKKIYVLSKTNTVEK
  USA300_FPR3757  LVMTAGFFLLNMSSIIDKKIYVLSKTNTVEK
                  *******************************