PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002445000
• symbol^?: —
• synonym:
• description^?: DUF443 domain-containing protein

  descriptions from strain specific annotations:

  • DUF443 domain-containing protein
  • membrane spanning protein
  • pseudogene
  • staphylococcus aureus paralogous family
• strand^?: +
• coordinates^?: 2961037..2970982
• synteny block^?: BlockID0016830
• occurrence^?: in 67% of 33 strains

⊟Orthologs

COL:
SACOL0654
N315:
—
NCTC8325:
SAOUHSC_00602
Newman:
NWMN_0571
USA300_FPR3757:
SAUSA300_0588
04-02981:
—
08BA02176:
C248_0683
11819-97:
—
6850:
—
71193:
ST398NM01_0680
ECT-R 2:
—
ED133:
SAOV_0633
ED98:
—
HO 5096 0412:
SAEMRSA15_05250
JH1:
—
JH9:
—
JKD6008:
SAA6008_00617
JKD6159:
SAA6159_00554
LGA251:
SARLGA251_05340
M013:
—
MRSA252:
SAR0605
MSHR1132:
SAMSHR1132_05410
MSSA476:
SAS0567
Mu3:
—
Mu50:
—
MW2:
MW0562
RF122:
SAB0551
ST398:
SAPIG0680
T0131:
SAT0131_00666 (recX)
TCH60:
HMPREF0772_12588
TW20:
SATW20_06760
USA300_TCH1516:
USA300HOU_0605
VC40:
SAVC_02635

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLLCESKIINKNPKYRIIKYNDEYLMVDIISTWISLFFPFINWFIPKEYVKISREEFENL
  NCTC8325        MLLCESKIINKNPKYRIIKYNDEYLMVDIISTWISLFFPFINWFIPKEYVKISREEFENL
  Newman          MLLCESKIINKNQKYRIIKYNDEYLMVDIISTWISLFFPFINWFIPKEYVKISREEFENL
  USA300_FPR3757  MLLCESKIINKNPKYRIIKYNDEYLMVDIISTWISLFFPFINWFIPKEYVKISREEFENL
                  ************ ***********************************************
  
  COL             NIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDIQLDKKLVIAICCITFIGILIFYVRLI
  NCTC8325        NIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDIQLDKKLVIAICCITFIGILIFYVRLI
  Newman          NIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDIQLDKKLVIAICCITFIGILIFYVRLI
  USA300_FPR3757  NIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDIQLDKKLVIAICCITFIGILIFYVRLI
                  ************************************************************
  
  COL             KKSSLNIYNTKNKRSKIFLIPTLKNVCFTLFGYILFGGLTMLFLDALLSMSYQNIIVYFV
  NCTC8325        KKSSLNIYNTKNKRSKIFLIPTLKNVCFTLFGYILFGGLTMLFLDALLSMSYQNIIVYFV
  Newman          KKSSLNIYNTKNKRSKIFLIPTLKNVCFTLFGYILFGGLTMLFLDALLSMSYQNIIVYFV
  USA300_FPR3757  KKSSLNIYNTKNKRSKIFLIPTLKNVCFTLFGYILFGGLTMLFLDALLSMSYQNIIVYFV
                  ************************************************************
  
  COL             WIAVIMGFFLVNIALIIDKNIHVILKNQ
  NCTC8325        WIAVIMGFFLVNIALIIDKNIHVILKNQ
  Newman          WIAVIMGFFLVNIALIIDKNIHVILKNQ
  USA300_FPR3757  WIAVIMGFFLVNIALIIDKNIHVILKNQ
                  ****************************