From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN002460000
  • symbol?:
  • synonym:
  • description?: DUF443 domain-containing protein

      descriptions from strain specific annotations:

    • DUF443 domain-containing protein
    • staphylococcus aureus paralogous family
  • strand?: +
  • coordinates?: 2967047..2967676
  • synteny block?: BlockID0016970
  • occurrence?: in 39% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0679
    11819-97:
    6850:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_00613
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS0564
    Mu3:
    Mu50:
    MW2:
    MW0559
    RF122:
    SAB0548
    ST398:
    SAPIG0676
    T0131:
    TCH60:
    TW20:
    SATW20_06730
    USA300_TCH1516:
    USA300HOU_0601
    VC40:
    SAVC_02615

Genome Viewer[edit | edit source]

COL
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MLLCDVRVIYKNPKYKVIQHNGEYLLVDLVSTWFVYFFPFINWFIPKKYAIISEEEFENL
    NCTC8325        MLLCDVRVIYKNPKYKVIQHNGEYLLVDLVSTWFVYFFPFINWFIPKKYAIISEEEFENL
    Newman          MLLCDVRVIYKNPKYKVIQHNGEYLLVDLVSTWFVYFFPFINWFIPKKYAIISEEEFENL
    USA300_FPR3757  MLLCDVRVIYKNPKYKVIQHNGEYLLVDLVSTWFVYFFPFINWFIPKKYAIISEEEFENL
                    ************************************************************

    COL             NVVKPNKNNVFWSVIGSSVLFGVTLRKYIHVFDVQLDKLVVMILCALALICVIVFYFNLN
    NCTC8325        NVVKPNKNNVFWSVIGSSVLFGVTLRKYIHVFDVQLDKLVVMILCALALICVIVFYFNLN
    Newman          NVVKPNKNNVFWSVIGSSVLFGVTLRKYIHVFDVQLDKLVVMILCALALICVIVFYFNLN
    USA300_FPR3757  NVVKPNKNNVFWSVIGSSVLFGVTLRKYIHVFDVQLDKLVVMILCALALICVIVFYFNLN
                    ************************************************************

    COL             RKLKLKVFDTNIEKNKRVILIPTFKLGCFLVFGYIFAGSFSIFSLIALMTIEPQNIIIFI
    NCTC8325        RKLKLKVFDTNIEKNKRVILIPTFKLGCFLVFGYIFAGSFSIFSLIALMTIEPQNIIIFI
    Newman          RKLKLKVFDTNIEKNKRVILIPTFKLGCFLVFGYIFAGSFSIFSLIALMTIEPQNIIIFI
    USA300_FPR3757  RKLKLKVFDTNIEKNKRVILIPTFKLGCFLVFGYIFAGSFSIFSLIALMTIEPQNIIIFI
                    ************************************************************

    COL             YWIMMTMLFFLLNMTSIGNEKVRVIMKNN
    NCTC8325        YWIMMTMLFFLLNMTSIGNEKVRVIMKNN
    Newman          YWIMMTMLFFLLNMTSIGNEKVRVIMKNN
    USA300_FPR3757  YWIMMTMLFFLLNMTSIGNEKVRVIMKNN
                    *****************************