PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002609000
• symbol^?: opuBA
• synonym:
• description^?: glycine/betaine ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • glycine/betaine ABC transporter ATP-binding protein
  • osmoprotectant ABC transporter ATP-binding protein
  • ABC transporter
  • ABC transporter ATP-binding protein
  • osmoprotectant proline/glycine/betaine ABC transporter, ATP-binding protein, putative
  • putative osmoprotectant ABC transporter ATP-binding protein
  • Glycine betaine ABC transport system, ATP-binding protein OpuAA
  • ABC transporter family protein
  • choline transport ATP-binding protein
  • choline transport ATP-binding protein opuBA. domain protein
  • glycine/betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, ABC protein
  • glycine betaine/carnitine/choline ABC transporter ATP-binding protein
  • glycine betaine/carnitine/choline ATP-binding ABC transport protein
  • glycine betaine transport ATP-binding protein
  • Osmoprotectant ABC transporter, ATP-binding protein
  • osmoprotectant ABC transporter, ATP-binding protein, putative
• strand^?: +
• coordinates^?: 3120378..3121355
• synteny block^?: BlockID0018450
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0781
N315:
SA0677
NCTC8325:
SAOUHSC_00731
Newman:
NWMN_0690
USA300_FPR3757:
SAUSA300_0706
04-02981:
SA2981_0699
08BA02176:
C248_0807
11819-97:
MS7_0773
6850:
RSAU_000696
71193:
ST398NM01_0799
ECT-R 2:
ECTR2_672
ED133:
SAOV_0756
ED98:
SAAV_0683
HO 5096 0412:
SAEMRSA15_06480
JH1:
SaurJH1_0762
JH9:
SaurJH9_0745
JKD6008:
SAA6008_00737
JKD6159:
SAA6159_00676
LGA251:
SARLGA251_06550
M013:
M013TW_0708
MRSA252:
SAR0775
MSHR1132:
SAMSHR1132_06670
MSSA476:
SAS0687
Mu3:
SAHV_0719
Mu50:
SAV0722
MW2:
MW0684
RF122:
SAB0671
ST398:
SAPIG0799
T0131:
SAT0131_00791
TCH60:
HMPREF0772_12465
TW20:
SATW20_07970
USA300_TCH1516:
USA300HOU_0745
VC40:
SAVC_03240

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYF
  N315            MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYF
  NCTC8325        MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYF
  Newman          MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYF
  USA300_FPR3757  MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYF
                  ************************************************************
  
  COL             KDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEM
  N315            KDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLDM
  NCTC8325        KDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEM
  Newman          KDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEM
  USA300_FPR3757  KDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEM
                  **********************************************************:*
  
  COL             VGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIE
  N315            VGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIE
  NCTC8325        VGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIE
  Newman          VGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIE
  USA300_FPR3757  VGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIE
                  ************************************************************
  
  COL             LQTKIKKAIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHL
  N315            LQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHL
  NCTC8325        LQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHL
  Newman          LQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHL
  USA300_FPR3757  LQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHL
                  *******:****************************************************
  
  COL             EDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDS
  N315            EDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQHLSESERVIVMQEDS
  NCTC8325        EDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDS
  Newman          EDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDS
  USA300_FPR3757  EDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDS
                  ********************************************* **************
  
  COL             VGQYVIDRKDIFKYLSQKKEVAQHD
  N315            VGQYVIDRKDIFKYLSQKKEVAQHD
  NCTC8325        VGQYVIDRKDIFKYLSQKKEVAQHD
  Newman          VGQYVIDRKDIFKYLSQKKEVAQHD
  USA300_FPR3757  VGQYVIDRKDIFKYLSQKKEVAQHD
                  *************************