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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002614000
- symbol?: —
- synonym:
- description?: 5'-3'-deoxyribonucleotidase
- 5'-3'-deoxyribonucleotidase
- 5'-3'-deoxyribonucleotidase, putative
- Putative 5(3)-deoxyribonucleotidase
- 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) family protein
- 5 nucleotidase, deoxy, cytosolic type C
- hydrolase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3124939..3125705
- synteny block?: BlockID0018500
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0703
08BA02176:
C248_0810
11819-97:
MS7_0776
6850:
RSAU_000699
71193:
ST398NM01_0802
ECT-R 2:
ECTR2_675
ED133:
SAOV_0760
ED98:
SAAV_0686
HO 5096 0412:
SAEMRSA15_06510
JH1:
SaurJH1_0765
JH9:
SaurJH9_0748
JKD6008:
SAA6008_00740
JKD6159:
SAA6159_00679
LGA251:
SARLGA251_06580
M013:
M013TW_0711
MRSA252:
SAR0778
MSHR1132:
SAMSHR1132_06700
MSSA476:
SAS0690
Mu3:
SAHV_0722
Mu50:
SAV0725
MW2:
MW0687
RF122:
SAB0674
ST398:
SAPIG0802
T0131:
SAT0131_00794
TCH60:
HMPREF0772_12462
TW20:
SATW20_08000
USA300_TCH1516:
USA300HOU_0748
VC40:
SAVC_03260
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLRE
N315 MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLRE
NCTC8325 MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLRE
Newman MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLRE
USA300_FPR3757 MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLRE
************************************************************
COL PGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVF
N315 PGFFRHLKVMPHAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVF
NCTC8325 PGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVF
Newman PGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVF
USA300_FPR3757 SGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVF
.**********:************************************************
COL CGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
N315 CGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
NCTC8325 CGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
Newman CGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
USA300_FPR3757 CGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
************************************************************