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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002664000
- symbol?: prfB
- synonym:
- description?: peptide chain release factor 2
- peptide chain release factor 2
- peptide chain release factor 2 (RF-2)
- peptide chain release factor RF2
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3161633..3162743
- synteny block?: BlockID0018990
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0732 (prfB)
08BA02176:
C248_0841 (prfB)
11819-97:
MS7_0804 (prfB)
6850:
RSAU_000729 (prfB)
71193:
ST398NM01_0830
ECT-R 2:
ECTR2_704 (prfB)
ED133:
SAOV_0791
ED98:
SAAV_0717 (prfB)
HO 5096 0412:
SAEMRSA15_06800 (prfB)
JH1:
SaurJH1_0795 (prfB)
JH9:
SaurJH9_0778 (prfB)
JKD6008:
SAA6008_00769
JKD6159:
SAA6159_00709
LGA251:
SARLGA251_06870 (prfB)
M013:
M013TW_0741
MRSA252:
SAR0808 (prfB)
MSHR1132:
SAMSHR1132_06990
MSSA476:
SAS0719 (prfB)
Mu3:
SAHV_0751 (prfB)
Mu50:
SAV0754 (prfB)
MW2:
MW0716 (prfB)
RF122:
SAB0706 (prfB)
ST398:
SAPIG0830 (prfB)
T0131:
SAT0131_00826
TCH60:
HMPREF0772_12428 (prfB)
TW20:
SATW20_08290 (prfB)
USA300_TCH1516:
USA300HOU_0782 (prfB)
VC40:
SAVC_03405 (prfB)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNN
N315 ---------------------------------------MAEPNFWDNQTKAQDIIDKNN
NCTC8325 ------------------------------------------------------------
Newman --------------------------------------MMAEPNFWDNQTKAQDIIDKNN
COL ALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDG
N315 ALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDG
NCTC8325 ------------------MDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDG
Newman ALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDG
******************************************
COL PHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTL
N315 PHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTL
NCTC8325 PHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTL
Newman PHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTL
************************************************************
COL LIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDIT
N315 LIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDIT
NCTC8325 LIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDIT
Newman LIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDIT
************************************************************
COL VDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKL
N315 VDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKL
NCTC8325 VDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKL
Newman VDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKL
************************************************************
COL EEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIES
N315 EEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIES
NCTC8325 EEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIES
Newman EEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIES
************************************************************
COL YLRQTMSHD
N315 YLRQTMSHD
NCTC8325 YLRQTMSHD
Newman YLRQTMSHD
*********