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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN002868000
- symbol?: —
- synonym:
- description?: phage capsid protein
- strand?: +
- coordinates?: 3314856..3315914
- synteny block?: BlockID0020430
- occurrence?: in 6% of 34 strains
ccm : satellite pathogenicity island capsid morphogenesis protein [1]
Component of helper pathogenicity island SaPI5 that redirects cos-site replicon siphovirus Φ12-like mcp monomers from prolate capsomers to the smaller, ccp-containing isometric capsomers used for SaPI5 propagation. An ortholog from SaPIbov5 has been characterized and crystalized : 7RWZ_A
⊟Orthologs[edit | edit source]
COL:
—
N315:
—
NCTC8325:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0864
VC40:
—
⊟Genome Viewer[edit | edit source]
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ N'Toia C Hawkins, James L Kizziah, José R Penadés, Terje Dokland
Shape shifter: redirection of prolate phage capsid assembly by staphylococcal pathogenicity islands.
Nat Commun: 2021, 12(1);6408
[PubMed:34737316] [WorldCat.org] [DOI] (I e)