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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003156000
- symbol?: opp4C
- synonym:
- description?: oligopeptide ABC transporter permease
- oligopeptide ABC transporter permease
- peptide ABC transporter permease
- ABC transporter permease
- oligopeptide transport system permease protein OppC, putative
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport systems inner membrane component
- oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
- oligopeptide ABC superfamily ATP binding cassette transporter, permease protein
- Oligopeptide ABC transporter, permease protein
- oligopeptide ABC transporter membrane protein
- Oligopeptide transport system permease OppC
- oligopeptide transport system permease protein appC
- Oligopeptide transport system permease protein oppC
- putative oligopeptide transport system permease
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3548552..3549436
- synteny block?: BlockID0022440
- occurrence?: in 85% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0950 (oppC)
08BA02176:
—
11819-97:
MS7_0951
6850:
RSAU_000871 (oppC2)
71193:
—
ECT-R 2:
ECTR2_850
ED133:
SAOV_0941
ED98:
SAAV_0956
HO 5096 0412:
SAEMRSA15_08240 (appC)
JH1:
SaurJH1_1013
JH9:
SaurJH9_0994
JKD6008:
SAA6008_00948
JKD6159:
—
LGA251:
SARLGA251_09110 (appC)
M013:
M013TW_0917
MRSA252:
SAR0960 (appC)
MSHR1132:
SAMSHR1132_08430
MSSA476:
SAS0865
Mu3:
SAHV_0990
Mu50:
SAV0995
MW2:
MW0877
RF122:
—
ST398:
—
T0131:
SAT0131_01030 (rpmE2)
TCH60:
HMPREF0772_12246 (appC)
TW20:
SATW20_09930 (appC)
USA300_TCH1516:
USA300HOU_0953 (oppC3)
VC40:
SAVC_04145
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MQNKSKSPFKIAFSKFIHNKIAMLSVIFLLIITIVSIIAPLIAPFPVNQQDLLNIKGEMT
N315 MQNKSKSPFKIALSRFIHNKIAMLSIIFLLIITIVSIIAPLIAPFPVNQQDLLNIKGEMT
NCTC8325 MQNKSKSPFKIAFSKFIHNKIAMLSVIFLLIITIVSIIAPLIAPFPVNQQDLLNIKGEMT
Newman MQNKSKSPFKIAFSKFIHNKIAMLSVIFLLIITIVSIIAPLIAPFPVNQQDLLNIKGEMT
USA300_FPR3757 MQNKSKSPFKIAFSKFIHNKIAMLSVIFLLIITIVSIIAPLIAPFPVNQQDLLNIKGEMT
************:*:**********:**********************************
COL AQNILGTDSGGRDNFSRLLYAGRISLSIGITSTIGMLLIGITVGVISGYFGGIVDTLLMR
N315 AQNILGTDSGGRDNFSRLLYAGRISLSIGITSTIGMLLIGITVGVISGYFGGIVDTLLMR
NCTC8325 AQNILGTDSGGRDNFSRLLYAGRISLSIGITSTIGMLLIGITVGVISGYFGGIVDTLLMR
Newman AQNILGTDSGGRDNFSRLLYAGRISLSIGITSTIGMLLIGITVGVISGYFGGIVDTLLMR
USA300_FPR3757 AQNILGTDSGGRDNFSRLLYAGRISLSIGITSTIGMLLIGITVGVISGYFGGIVDTLLMR
************************************************************
COL ITEFVMLFPFLIFAIVLNAALGDKIKNPYGSAIILVLVIIVLSWGGIARLVRGKVLQEKE
N315 ITEFVMLFPFLIFAIVLNAALGDKIKNPYGSAIILVLVIIVLSWGGIARLVRGKVLQEKE
NCTC8325 ITEFVMLFPFLIFAIVLNAALGDKIKNPYGSAIILVLVIIVLSWGGIARLVRGKVLQEKE
Newman ITEFVMLFPFLIFAIVLNAALGDKIKNPYGSAIILVLVIIVLSWGGIARLVRGKVLQEKE
USA300_FPR3757 ITEFVMLFPFLIFAIVLNAALGDKIKNPYGSAIILVLVIIVLSWGGIARLVRGKVLQEKE
************************************************************
COL NEYFLAAKSIGTPTYKIILKHLLPNILSVVIVQATLLFAGMIVVESGLSFLGFGISKAIP
N315 NEYFLAAKSIGTPTYKIILKHLLPNILSVVIVQATLLFAGMIVVESGLSFLGFGISKAIP
NCTC8325 NEYFLAAKSIGTPTYKIILKHLLPNILSVVIVQATLLFAGMIVVESGLSFLGFGISKAIP
Newman NEYFLAAKSIGTPTYKIILKHLLPNILSVVIVQATLLFAGMIVVESGLSFLGFGISKAIP
USA300_FPR3757 NEYFLAAKSIGTPTYKIILKHLLPNILSVVIVQATLLFAGMIVVESGLSFLGFGISKAIP
************************************************************
COL SWGNMLSDAQEGDVISGKPWIWMPPAIMITLTILSINFVGEGIKDAFNPRGRR
N315 SWGNMLSDAQEGDVISGKPWIWMPPAIMITLTILSINFVGEGLKDAFNPRGRR
NCTC8325 SWGNMLSDAQEGDVISGKPWIWMPPAIMITLTILSINFVGEGIKDAFNPRGRR
Newman SWGNMLSDAQEGDVISGKPWIWMPPAIMITLTILSINFVGEGIKDAFNPRGRR
USA300_FPR3757 SWGNMLSDAQEGDVISGKPWIWMPPAIMITLTILSINFVGEGIKDAFNPRGRR
******************************************:**********