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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003170000
- symbol?: trfB
- synonym:
- description?: competence protein CoiA
- competence protein CoiA
- CoiA-domain competence protein, putative
- competence protein
- putative competence protein
- competence protein, putative
- competence CoiA family protein
- competence CoiA-like family protein
- competence protein/transcription factor
- competence protein CoiA-like family protein
- competence-related protein
- pseudogene
- transcription factor
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3561901..3562924
- synteny block?: BlockID0022570
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0954 (coiA)
08BA02176:
C248_1022
11819-97:
MS7_0955
6850:
RSAU_000875
71193:
ST398NM01_0995
ECT-R 2:
ECTR2_854
ED133:
SAOV_0945
ED98:
SAAV_0962
HO 5096 0412:
SAEMRSA15_08300
JH1:
SaurJH1_1017
JH9:
SaurJH9_0998
JKD6008:
SAA6008_00953 (coiA)
JKD6159:
SAA6159_00856 (coiA)
LGA251:
SARLGA251_09150
M013:
M013TW_0922
MRSA252:
SAR0967
MSHR1132:
SAMSHR1132_08470
MSSA476:
SAS0869
Mu3:
SAHV_0994
Mu50:
SAV0999
MW2:
MW0881
RF122:
SAB0866
ST398:
SAPIG0995
T0131:
SAT0131_01035 (murA2)
TCH60:
HMPREF0772_12237
TW20:
SATW20_09970
USA300_TCH1516:
USA300HOU_0957
VC40:
SAVC_04165
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETI
N315 MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETI
NCTC8325 MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETI
Newman MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETI
USA300_FPR3757 ------------------------------------------------------------
COL KHYKSKLILAQMIQQQGCKVEIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTE
N315 KHYKSKLILAQMIQQQGCKVEIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTE
NCTC8325 KHYKSKLILAQMIQQQGCKVEIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTE
Newman KHYKSKLILAQMIQQQGCKVEIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTE
USA300_FPR3757 -----------------------------------MINNKYVIELQYSPIPYKQILQRTE
:************************
COL GLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKLHTFNLEKKQIMMFQQIQYLG
N315 GLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKLHTFNLEKKQIMMFQQIQYLG
NCTC8325 GLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKLHTFNLEKKQIMMFQQIQYLG
Newman GLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKLHTFNLEKKQIMMFQQIQYLG
USA300_FPR3757 GLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKLHTFNLEKKQIMMFQQIQYLG
****************************:*:****:************************
COL GHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
N315 GHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
NCTC8325 GHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
Newman GHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
USA300_FPR3757 GHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
************* **********************************************
COL LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALE
N315 LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALE
NCTC8325 LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALE
Newman LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALE
USA300_FPR3757 LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALE
*******:************:***************************************
COL SKTAIIEKLINNYLNICSDKGNDVQILF
N315 SKTAIIEKLINNYLNICSDRGNDVQILF
NCTC8325 SKTAIIEKLINNYLNICSDKGNDVQILF
Newman SKTAIIEKLINNYLNICSDKGNDVQILF
USA300_FPR3757 SKTAIIEKLINNYLNICSDKGNDVQILF
*******************:********