PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003225000
• symbol^?: —
• synonym:
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • ABC transporter, ATP-binding protein, putative
  • bacteriocin ABC transporter ATP-binding protein
  • ABC superfamily ATP binding cassette transporter, ABC protein
  • ABC transporter, ATP-binding protein
  • ABC transporter family protein
  • pseudogene
  • putative bacteriocin export ABC transporter
• strand^?: +
• coordinates^?: 3607773..3608123
• synteny block^?: BlockID0023110
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1040
N315:
SA0888
NCTC8325:
SAOUHSC_00970
Newman:
NWMN_0903
USA300_FPR3757:
SAUSA300_0936
04-02981:
SA2981_0988
08BA02176:
C248_1058
11819-97:
MS7_0990
6850:
RSAU_000925
71193:
ST398NM01_1031
ECT-R 2:
ECTR2_889
ED133:
SAOV_0979
ED98:
SAAV_0997
HO 5096 0412:
SAEMRSA15_08640
JH1:
SaurJH1_1115
JH9:
SaurJH9_1093
JKD6008:
SAA6008_00987
JKD6159:
SAA6159_00889
LGA251:
SARLGA251_09480
M013:
M013TW_0963
MRSA252:
SAR1004
MSHR1132:
SAMSHR1132_08810
MSSA476:
SAS0968
Mu3:
SAHV_1028
Mu50:
SAV1035
MW2:
MW0916
RF122:
SAB0898
ST398:
SAPIG1031
T0131:
SAT0131_01067
TCH60:
HMPREF0772_12202
TW20:
SATW20_10300
USA300_TCH1516:
—
VC40:
SAVC_04330

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIELKDLTIQKGNTHILKKLNLKFQCGKSYALIGKSGCGKSTLLNTIAGLEKTGKQYVYF
  N315            MIELKDLTIQKGNIHILKKLNLKFQCGKSYALIGKSGCGKSTLLNTIAGLEKTGKQYVYF
  NCTC8325        MIELKDLTIQKGNTHILKKLNLKFQCGKSYALIGKSGCGKSTLLNTIAGLEKTGKQYVYF
  Newman          MIELKDLTIQKGNTHILKKLNLKFQCGKSYALIGKSGCGKSTLLNTIAGLEKTGKQYVYF
  USA300_FPR3757  MIELKDLTIQKGNTHILKKLNLKFQCGKSYALIGKSGCGKSTLLNTIAGLEKTGKQYVYF
                  ************* **********************************************
  
  COL             NGQLEQFKSNFYRDKLGYLFQNYGLIDNLTVNENLDIGLAYKKISKKEKEQIKIRYIEQF
  N315            NGQLEQFKSNFYRDKLGYLFQNYGLIDNLTVNENLDIGLAYKKISKKEKEQLKIRYIEQF
  NCTC8325        NGQLEQFKSNFYRDKLGYLFQNYGLIDNLTVNENLDIGLAYKKISKKEKEQIKIRYIEQF
  Newman          NGQLEQFKSNFYRDKLGYLFQNYGLIDNLTVNENLDIGLAYKKISKKEKEQIKIRYIEQF
  USA300_FPR3757  NGQLEQFKSNFYRDKLGYLFQNYGLIDNLTVNENLDIGLAYKKISKKEKEQIKIRYIEQF
                  ***************************************************:********
  
  COL             GLSNSLKRKVHTLSGGEQQRVALIRMMLKDPIVMLADEPTGALDPKTGQMIIQSLFGLVD
  N315            GLSNSLKRKVHTLSGGEQQRVALIRMMLKDPIVMLADEPTGALDPKTGQMIIQSLFDLVD
  NCTC8325        GLSNSLKRKVHTLSGGEQQRVALIRMMLKDPIVMLADEPTGALDPKTGQMIIQSLFGLVD
  Newman          GLSNSLKRKVHTLSGGEQQRVALIRMMLKDPIVMLADEPTGALDPKTGQMIIQSLFGLVD
  USA300_FPR3757  GLSNSLKRKVHTLSGGEQQRVALIRMMLKDPIVMLADEPTGALDPKTGQMIIQSLFGLVD
                  ********************************************************.***
  
  COL             ENKVLILATHDMAIANQCDEIIDLEQYRKVASM
  N315            ENKVLILATHDMAIANQCDEIIDLEQYSKVASM
  NCTC8325        ENKVLILATHDMAIANQCDEIIDLEQYRKVASM
  Newman          ENKVLILATHDMAIANQCDEIIDLEQYRKVASM
  USA300_FPR3757  ENKVLILATHDMAIANQCDEIIDLEQYRKVASM
                  *************************** *****