PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003306000
• symbol^?: cydA
• synonym:
• description^?: cytochrome ubiquinol oxidase subunit I

  descriptions from strain specific annotations:

  • cytochrome ubiquinol oxidase subunit I
  • cytochrome D ubiquinol oxidase, subunit I
  • cytochrome d ubiquinol oxidase subunit I
  • cytochrome d ubiquinol oxidase, subunit I, putative
  • bacterial Cytochrome Ubiquinol Oxidase family protein
  • cytochrome bd ubiquinol oxidase, subunit I
  • cytochrome bd ubiquinol oxidase subunit I
  • cytochrome D ubiquinol oxidase subunit 1-like protein
  • cytochrome ubiquinol oxidase
  • Cytochrome Ubiquinol Oxidase family protein
  • putative cytochrome ubiquinol oxidase
• strand^?: +
• coordinates^?: 3676622..3677983
• synteny block^?: BlockID0023900
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1094 (cydA)
N315:
SA0937
NCTC8325:
SAOUHSC_01031
Newman:
NWMN_0952 (cydA)
USA300_FPR3757:
SAUSA300_0986
04-02981:
SA2981_1042
08BA02176:
C248_1112
11819-97:
MS7_1043
6850:
RSAU_000971 (cydA)
71193:
ST398NM01_1083
ECT-R 2:
ECTR2_941
ED133:
SAOV_1030
ED98:
SAAV_1051 (cydA)
HO 5096 0412:
SAEMRSA15_09160
JH1:
SaurJH1_1168
JH9:
SaurJH9_1146
JKD6008:
SAA6008_01041
JKD6159:
SAA6159_00942
LGA251:
SARLGA251_09990
M013:
M013TW_1018
MRSA252:
SAR1059
MSHR1132:
SAMSHR1132_09330
MSSA476:
SAS1021
Mu3:
SAHV_1078
Mu50:
SAV1086
MW2:
MW0968
RF122:
SAB0952
ST398:
SAPIG1083
T0131:
SAT0131_01122
TCH60:
HMPREF0772_12147 (cydA)
TW20:
SATW20_10810
USA300_TCH1516:
USA300HOU_1028 (cydA)
VC40:
SAVC_04590

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTI
  N315            MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTI
  NCTC8325        MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTI
  Newman          MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTI
  USA300_FPR3757  MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTI
                  ************************************************************
  
  COL             TVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFK
  N315            TVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFK
  NCTC8325        TVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFK
  Newman          TVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFK
  USA300_FPR3757  TVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFK
                  ************************************************************
  
  COL             NKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVR
  N315            NKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVR
  NCTC8325        NKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVR
  Newman          NKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVR
  USA300_FPR3757  NKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVR
                  ************************************************************
  
  COL             SFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDL
  N315            SFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDL
  NCTC8325        SFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDL
  Newman          SFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDL
  USA300_FPR3757  SFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDL
                  ************************************************************
  
  COL             SAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVK
  N315            SAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVK
  NCTC8325        SAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVK
  Newman          SAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVK
  USA300_FPR3757  SAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVK
                  ************************************************************
  
  COL             TKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLY
  N315            TKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLY
  NCTC8325        TKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLY
  Newman          TKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLY
  USA300_FPR3757  TKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLY
                  ************************************************************
  
  COL             GILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILM
  N315            GILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILM
  NCTC8325        GILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILM
  Newman          GILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILM
  USA300_FPR3757  GILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILM
                  ************************************************************
  
  COL             YTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
  N315            YTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
  NCTC8325        YTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
  Newman          YTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
  USA300_FPR3757  YTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
                  *********************************