PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003500000
• symbol^?: sun
• synonym:
• description^?: 16S rRNA (cytosine(967)-C(5))-methyltransferase

  descriptions from strain specific annotations:

  • 16S rRNA (cytosine(967)-C(5))-methyltransferase
  • ribosomal RNA small subunit methyltransferase B
  • 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
  • sun protein
  • 16S rRNA m(5)C 967 methyltransferase
  • 16S rRNA methyltransferase B
  • RNA-binding protein
  • RNA-binding Sun protein
  • rRNA (cytosine-5-)-methyltransferase
  • SA1060 protein
• strand^?: +
• coordinates^?: 3839410..3840795
• synteny block^?: BlockID0025790
• occurrence^?: in 100% of 33 strains

Suggest a pan gene symbol of "rsmB", a synonym of "sun" and a description of "16S rRNA cytosine(976)-C(5)-methyltransferase" to harmonize with PMID 38902339

⊟Orthologs

COL:
SACOL1229 (sun)
N315:
SA1060
NCTC8325:
SAOUHSC_01184
Newman:
NWMN_1127
USA300_FPR3757:
SAUSA300_1110 (sun)
04-02981:
SA2981_1175
08BA02176:
C248_1247
11819-97:
MS7_1175 (sun)
6850:
RSAU_001099 (sun)
71193:
ST398NM01_1216
ECT-R 2:
ECTR2_1073 (sun)
ED133:
SAOV_1220
ED98:
SAAV_1189 (sun)
HO 5096 0412:
SAEMRSA15_10500
JH1:
SaurJH1_1301
JH9:
SaurJH9_1276
JKD6008:
SAA6008_01172 (sun)
JKD6159:
SAA6159_01070 (sun)
LGA251:
SARLGA251_11280 (rsmB)
M013:
M013TW_1155
MRSA252:
SAR1193
MSHR1132:
SAMSHR1132_10580
MSSA476:
SAS1151
Mu3:
SAHV_1207
Mu50:
SAV1217
MW2:
MW1100
RF122:
SAB1081 (sun)
ST398:
SAPIG1216 (sun)
T0131:
SAT0131_01266 (modB)
TCH60:
HMPREF0772_12015 (rsmB)
TW20:
SATW20_12110 (rsmB)
USA300_TCH1516:
USA300HOU_1154
VC40:
SAVC_05250

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             --------------------------MIENVRSLAFDTIQDILNEGAYSNLRINEVLSEN
  N315            MSWEKENVSCQLFKWCAKHTSREETYMIENVRSLAFDTIQDILNEGAYSNLRINEVLSEN
  NCTC8325        --------------------------MIENVRSLAFDTIQDILNEGAYSNLRINEVLSEN
  Newman          --------------------------MIENVRSLAFDTIQDILNEGAYSNLRINEVLSEN
  USA300_FPR3757  --------------------------MIENVRSLAFDTIQDILNEGAYSNLRINEVLSEN
                                            **********************************
  
  COL             ELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIKAWVRQLLWMSIYQYVYLDKVPNH
  N315            ELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIKAWVRQLLWMSIYQYVYLDKVPNH
  NCTC8325        ELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIKAWVRQLLWMSIYQYVYLDKVPNH
  Newman          ELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIKAWVRQLLWMSIYQYVYLDKVPNH
  USA300_FPR3757  ELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIKAWVRQLLWMSIYQYVYLDKVPNH
                  ************************************************************
  
  COL             AIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDH
  N315            AIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDH
  NCTC8325        AIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDH
  Newman          AIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDH
  USA300_FPR3757  AIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDH
                  ************************************************************
  
  COL             WATHYGLEETETILQSFLETTSTTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHI
  N315            WATHYGLEETETILQSFLETTSTTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHI
  NCTC8325        WATHYGLEETEKILQSFLETTSTTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHI
  Newman          WATHYGLEETETILQSFLETTSTTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHI
  USA300_FPR3757  WATHYGLEETETILQSFLETTSTTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHI
                  ***********.************************************************
  
  COL             GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEG
  N315            GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEG
  NCTC8325        GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEG
  Newman          GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEG
  USA300_FPR3757  GGQPIIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEG
                  ************************************************************
  
  COL             QVDASDIHDHKIDLINFNIKKLRLTNIKAFQHDATKPYDKTYDKILVDAPCSGLGVMRHK
  N315            QVDASDIHDHKIDLINFNIKKLRLTNIKAFQHDATKPYDKTYDKILVDAPCSGLGVMRHK
  NCTC8325        QVDASDIHDHKIDLINFNIKKLRLTNIKAFQHDATKPYDKTYDKILVDAPCSGLGVMRHK
  Newman          QVDASDIHDHKIDLINFNIKKLRLTNIKAFQHDATKPYDKTYDKILVDAPCSGLGVMRHK
  USA300_FPR3757  QVDASDIHDHKIDLINFNIKKLRLTNIKAFQYDATKPYDKTYDKILVDAPCSGLGVMRHK
                  *******************************:****************************
  
  COL             PEIKYTQSKQHIESLVELQLEILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNK
  N315            PEIKYTQSKQHIESLVELQLEILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNK
  NCTC8325        PEIKYTQSKQHIESLVELQLEILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNK
  Newman          PEIKYTQSKQHIESLVELQLEILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNK
  USA300_FPR3757  PEIKYTQSKQHIESLVELQLEILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNK
                  ************************************************************
  
  COL             NFEFEPFQHPITGELVKTLQIMPQDFNSDGFFITKIKRKDN
  N315            NFEFEPFQHPITGELVKTLQIMPQDFNSDGFFITKIKRKDN
  NCTC8325        NFEFEPFQHPITGELVKTLQIMPQDFNSDGFFITKIKRKDN
  Newman          NFEFEPFQHPITGELVKTLQIMPQDFNSDGFFITKIKRKDN
  USA300_FPR3757  NFEFEPFQHPITGELVKTLQIMPQDFNSDGFFITKIKRKDN
                  *****************************************