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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003535000
- symbol?: rbgA
- synonym:
- description?: ribosomal biogenesis GTPase
- ribosomal biogenesis GTPase
- ribosome biogenesis GTPase YlqF
- GTPase YlqF, putative
- 50S ribosomal subunit maturation GTPase RbgA
- GTPase family
- GTPase protein
- GTPase YlqF
- GTP-binding protein
- putative GTPase protein
- putative GTP-binding protein
- ribosome biogenesis GTP-binding protein YlqF
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3874639..3875523
- synteny block?: BlockID0026120
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1201 (rbgA)
08BA02176:
C248_1274
11819-97:
MS7_1201 (ylqF)
6850:
RSAU_001125
71193:
ST398NM01_1243
ECT-R 2:
ECTR2_1099
ED133:
SAOV_1246
ED98:
SAAV_1217 (rbgA)
HO 5096 0412:
SAEMRSA15_10760
JH1:
SaurJH1_1327 (rbgA)
JH9:
SaurJH9_1302 (rbgA)
JKD6008:
SAA6008_01198 (rbgA)
JKD6159:
SAA6159_01098 (rbgA)
LGA251:
SARLGA251_11540
M013:
M013TW_1181
MRSA252:
SAR1219 (rbgA)
MSHR1132:
SAMSHR1132_10860
MSSA476:
SAS1177 (rbgA)
Mu3:
SAHV_1233 (rbgA)
Mu50:
SAV1243 (rbgA)
MW2:
MW1126 (rbgA)
RF122:
SAB1107 (rbgA)
ST398:
SAPIG1243
T0131:
SAT0131_01293
TCH60:
HMPREF0772_11988 (ylqF)
TW20:
SATW20_12370
USA300_TCH1516:
USA300HOU_1174 (rbgA)
VC40:
SAVC_05380 (rbgA)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
N315 MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
NCTC8325 MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
Newman MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
USA300_FPR3757 MVIQWYPGHMAKAKREVSEQLKKVDVVFELVDARIPYSSRNPMIDEVINQKPRVVILNKK
************************************************************
COL DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
N315 DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
NCTC8325 DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
Newman DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
USA300_FPR3757 DMSNLNEMSKWEQFFIDKGYYPVSVDAKHGKNLKKVEAAAIKATAEKFEREKAKGLKPRA
************************************************************
COL IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKF
N315 IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVSNALQLLDTPGILWPKF
NCTC8325 IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKF
Newman IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKF
USA300_FPR3757 IRAMIVGIPNVGKSTLINKLAKRSIAQTGNKPGVTKQQQWIKVGNALQLLDTPGILWPKF
*******************************************.****************
COL EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
N315 EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
NCTC8325 EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
Newman EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
USA300_FPR3757 EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFLIQNDLARLKSHYNIEVPEDAEIIAWFD
************************************************************
COL AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
N315 AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
NCTC8325 AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
Newman AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
USA300_FPR3757 AIGKKRGLIRRGNEIDYEAVIELIIYDIRNAKIGNYCFDIFKDMTEELANDANN
******************************************************