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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003578000
- symbol?: —
- synonym:
- description?: GntR family transcriptional regulator
- GntR family transcriptional regulator
- transcriptional regulator, GntR family, putative
- transcriptional regulator, GntR family protein
- bacterial regulatory s, gntR family protein
- pseudogene
- regulatory proteins, gntR family protein
- Transcriptional regulator in cluster with Zn-dependent hydrolase
- transcription regulator GntR family
- UbiC transcription regulator-associated domain-containing protein
- UTRA domain transcriptional regulator
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3919057..3919650
- synteny block?: BlockID0026550
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1235
08BA02176:
C248_1310
11819-97:
MS7_1235
6850:
RSAU_001160
71193:
ST398NM01_1279
ECT-R 2:
ECTR2_1133
ED133:
SAOV_1279
ED98:
SAAV_1252
HO 5096 0412:
SAEMRSA15_11100
JH1:
SaurJH1_1363
JH9:
SaurJH9_1337
JKD6008:
SAA6008_01232
JKD6159:
SAA6159_01132
LGA251:
SARLGA251_11880
M013:
M013TW_1217
MRSA252:
SAR1253
MSHR1132:
SAMSHR1132_11200
MSSA476:
SAS1211
Mu3:
SAHV_1267
Mu50:
SAV1277
MW2:
MW1160
RF122:
SAB1139
ST398:
SAPIG1279
T0131:
SAT0131_01332 (hutG)
TCH60:
HMPREF0772_11952
TW20:
SATW20_12710
USA300_TCH1516:
USA300HOU_1209
VC40:
SAVC_05550
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEAIQALITEQVIK
N315 MSEMNAVYNVKQYILNLIMQNKLEYGDQLPSNLSIARELNVKTDDVYEAIQALITEQVIK
NCTC8325 MSEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEAIQALITEQVIK
Newman MSEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEAIQALITEQVIK
USA300_FPR3757 MSEMNAVYNVKQYILNLIKQNKLEYGDQLPSNLSIARELNVKTDDVYEAIQALITEQVIK
****************** *****************************************
COL DNFEEGTSVKSLPPFFYPLNELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEE
N315 DNFEEGTSVKSLPPFFYPLNELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEE
NCTC8325 DNFEEGTSVKSLPPFFYPLNELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEE
Newman DNFEEGTSVKSLPPFFYPLNELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEE
USA300_FPR3757 DNFEEGTSVKSLPPFFYPLNELISIGQMIKNAGFECGTEYLNFDEQPATMLDANLLSVEE
************************************************************
COL GYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNGSILSAIKEQSNHNICYADTE
N315 GYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNGSILSAIKEQSNHNICYADTE
NCTC8325 GYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNGSILSAIKEQSNHNICYADTE
Newman GYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNGSILSAIKEQSNHNICYADTE
USA300_FPR3757 GYPVTIIERLRTADGEPVVYCLDKIAKKELTCTEYQMSNGSILSAIKEQSNHNICYADTE
************************************************************
COL IEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI
N315 IEAVNYEPRISEVLNASPHEGLILLKITHYNELDEPILYSLNYMKNSLVQFKITRKI
NCTC8325 IEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI
Newman IEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI
USA300_FPR3757 IEAVNYEPRISEVLNASPHEGLILLKITHYNESDEPILYSLNYMKNSLVQFKITRKI
******************************** ************************