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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003588000
- symbol?: rny
- synonym: cvfA
- description?: phosphodiesterase
- phosphodiesterase
- ribonuclease Y
- 2', 3'-cyclic-nucleotide 2'-phosphodiesterase, putative
- 2',3'-cyclic-nucleotide 2'-phosphodiesterase
- hydrolase
- Hydrolase (HAD superfamily)
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3929076..3930696
- synteny block?: BlockID0026650
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1244
08BA02176:
C248_1319
11819-97:
MS7_1244 (rny)
6850:
RSAU_001169 (cvfA)
71193:
ST398NM01_1288
ECT-R 2:
ECTR2_1142
ED133:
SAOV_1288
ED98:
SAAV_1261
HO 5096 0412:
SAEMRSA15_11190
JH1:
SaurJH1_1372
JH9:
SaurJH9_1346
JKD6008:
SAA6008_01241
JKD6159:
SAA6159_01141
LGA251:
SARLGA251_11970 (cvfA)
M013:
M013TW_1228
MRSA252:
SAR1262
MSHR1132:
SAMSHR1132_11290
MSSA476:
SAS1220
Mu3:
SAHV_1276
Mu50:
SAV1286
MW2:
MW1169
RF122:
SAB1148
ST398:
SAPIG1288
T0131:
SAT0131_01342
TCH60:
HMPREF0772_11942 (cvfA)
TW20:
SATW20_12800 (cvfA)
USA300_TCH1516:
USA300HOU_1218
VC40:
SAVC_05595
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
N315 MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
NCTC8325 MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
Newman MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
USA300_FPR3757 MNLLSLLLILLGIILGVVGGYVVARNLLLQKQSQARQTAEDIVNQAHKEADNIKKEKLLE
************************************************************
COL AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
N315 AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
NCTC8325 AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
Newman AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
USA300_FPR3757 AKEENQILREQTEAELRERRSELQRQETRLLQKEENLERKSDLLDKKDEILEQKESKIEE
************************************************************
COL KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
N315 KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
NCTC8325 KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
Newman KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
USA300_FPR3757 KQQQVDAKESSVQTLIMKHEQELERISGLTQEEAINEQLQRVEEELSQDIAVLVKEKEKE
************************************************************
COL AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
N315 AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
NCTC8325 AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
Newman AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
USA300_FPR3757 AKEKVDKTAKELLATAVQRLAADHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
************************************************************
COL IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
N315 IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
NCTC8325 IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
Newman IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
USA300_FPR3757 IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRE
************************************************************
COL AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
N315 AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
NCTC8325 AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
Newman AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
USA300_FPR3757 AGEQATFEVNAHNMHPDLVKIVGRLNYRTSYGQNVLKHSIEVAHLASMLAAELGEDETLA
************************************************************
COL KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
N315 KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
NCTC8325 KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
Newman KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
USA300_FPR3757 KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
************************************************************
COL AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
N315 AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
NCTC8325 AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
Newman AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
USA300_FPR3757 AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPEEIDD
************************************************************
COL LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
N315 LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
NCTC8325 LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
Newman LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
USA300_FPR3757 LKSYRLARDIKNQIEDELQYPGHIKVTVVRETRAVEYAK
***************************************