PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003651000
• symbol^?: —
• synonym:
• description^?: phage head morphogenesis protein

  descriptions from strain specific annotations:

  • phage head morphogenesis protein
  • putative phage head morphogenesis protein
  • pseudogene
• strand^?: +
• coordinates^?: 3975493..3979210
• synteny block^?: BlockID0027200
• occurrence^?: in 30% of 33 strains

⊟Orthologs

COL:
SACOL1339
N315:
—
NCTC8325:
SAOUHSC_01296
Newman:
NWMN_1223
USA300_FPR3757:
SAUSA300_1207
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_11490b (SAEMRSA15_11490)
JH1:
—
JH9:
—
JKD6008:
SAA6008_01270
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_01372
TCH60:
—
TW20:
SATW20_13080
USA300_TCH1516:
USA300HOU_1249
VC40:
SAVC_05770

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             -----------------------------------------------------MIPGVNA
  NCTC8325        MLFSLFVEKEESQKLTYLKELGEDGEYKYVAKIDSKTSKLCHSLNGKIFKVKDMIPGVNA
  Newman          MLFSLFVEKEESQKLTYLKELGEDGEYKYVAKIDSKTSKLCHSLNGKIFKVKDMIPGVNA
  USA300_FPR3757  MLFSLFVEKEESQKLTYLKELGEDGEYKYVAKIDSKTSKLCHSLNGKIFKVKDMIPGVNA
                                                                       *******
  
  COL             PPMHPWCRSTTVPHVGNWRDKFFKEREGKYQVEGCFIESGALNNKSDEYGIKRNRHAQIY
  NCTC8325        PPMHPWCRSTTVPHVGNWRDKFFKEREGKYQVEGCFIESGALNNKSDEYGIKRNRHAQIY
  Newman          PPMHPWCRSTTVPHVGNWRDKFFKEREGKYQVEGCFIESGALNNKSDEYGIKRNRHAQIY
  USA300_FPR3757  PPMHPWCRSTTVPHVGNWRDKFFKEREGKYQVEGCFIESGALNNKSDEYGIKRNRHAQIY
                  ************************************************************
  
  COL             YNSVRNRDKQIEISKIAKNTNINKNLIQRVYEHIFENKYLLESGFKQFDPDFYMAQSWQR
  NCTC8325        YNSVRNRDKQIEISKIAKNTNINKNLIQRVYEHIFENKYLLESGFKQFDPDFYMAQSWQR
  Newman          YNSVRNRDKQIEISKIAKNTNINKNLIQRVYEHIFENKYLLESGFKQFDPDFYMAQSWQR
  USA300_FPR3757  YNSVRNRDKQIEISKIAKNTNINKNLIQRVYEHIFENKYLLESGFKQFDPDFYMAQSWQR
                  ************************************************************
  
  COL             LREGKNIKKMDIIM
  NCTC8325        LREGKNIKKMDIIM
  Newman          LREGKNIKKMDIIM
  USA300_FPR3757  LREGKNIKKMDIIM
                  **************