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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003712000
- symbol?: —
- synonym:
- description?: secretion protein
- secretion protein
- CAP domain-containing protein
- SCP-like extracellular protein domain protein
- cysteine-rich secretory family protein
- pseudogene
- SCP family extracellular protein
- SCP-like extracellular family protein
- SCP-like extracellular protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4015170..4016186
- synteny block?: BlockID0027780
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1293
08BA02176:
C248_1374
11819-97:
MS7_1297
6850:
RSAU_001220
71193:
ST398NM01_1340
ECT-R 2:
ECTR2_1197
ED133:
SAOV_1351
ED98:
SAAV_1319
HO 5096 0412:
SAEMRSA15_11850
JH1:
SaurJH1_1426
JH9:
SaurJH9_1399
JKD6008:
SAA6008_01304
JKD6159:
SAA6159_01205
LGA251:
SARLGA251_12470
M013:
M013TW_1286
MRSA252:
SAR1348
MSHR1132:
SAMSHR1132_11830
MSSA476:
SAS1278
Mu3:
SAHV_1327
Mu50:
SAV1338
MW2:
MW1225
RF122:
SAB1196
ST398:
SAPIG1340
T0131:
SAT0131_01409 (narI)
TCH60:
HMPREF0772_11870
TW20:
SATW20_13400
USA300_TCH1516:
—
VC40:
SAVC_05930
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---------------------------------------------------MDTPKKQQF
N315 MKKFIVTVVAFLSIIIIAPITEFKPFIHLQNEVRQYIDIHINKETISAENKLDTPKKQQF
NCTC8325 ---------------------------------------------------MDTPKKQQF
Newman ---------------------------------------------------MDTPKKQQF
USA300_FPR3757 ---------------------------------------------------MDTPKKQQF
:********
COL AFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYNNFIMISYMKDKVNALYTN
N315 AFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYNNFIMISYMKDKVNALYTN
NCTC8325 AFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYNNFIMISYMKDKVNALYTN
Newman AFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYNNFIMISYMKDKVNALYTN
USA300_FPR3757 AFNNIQMNMSKSDVEKTLNKPKRVTFNEYGTKWYTYYDDDYNNFIMISYMKDKVNALYTN
************************************************************
COL QNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQNNKEYDVFHKNHIYTTVFYDK
N315 QNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQNNKEYDVFHKNHIYTTVFYDK
NCTC8325 QNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQNNKEYDVFHKNHIYTTVFYDK
Newman QNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQNNKEYDVFHKNHIYTTVFYDK
USA300_FPR3757 QNIITSKSKIKYNTPKSVVRQRLGEPETEIVKGRVRYEQNNKEYDVFHKNHIYTTVFYDK
************************************************************
COL HRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQNFDLVNAERKQHQLSTLKYSKQ
N315 HRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQNFDLVNAERKQHQLSTLKYSKQ
NCTC8325 HRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQNFDLVNAERKQHQLSTLKYSKQ
Newman HRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQNFDLVNAERKQHQLSTLKYSKQ
USA300_FPR3757 HRRNNVTAVLQVSDAMENRLKEQYGAPSKSLADSFELQNFDLVNAERKQHQLSTLKYSKQ
************************************************************
COL NSETARKHSKDMANNHYFDHTNLKGQSPFDRLKKDGITFNSAGENLAYGQVSSIYAHQGL
N315 NSETARKHSKDMAKNHYFDHTNLKGQSPFDRLKKDGITFNSAGENLAYGQVSSIYAHQGL
NCTC8325 NSETARKHSKDMANNHYFDHTNLKGQSPFDRLKKDGITFNSAGENLAYGQVSSIYAHQGL
Newman NSETARKHSKDMANNHYFDHTNLKGQSPFDRLKKDGITFNSAGENLAYGQVSSIYAHQGL
USA300_FPR3757 NSETARKHSKDMANNHYFDHTNLKGQSPFDRLKKDGITFNSAGENLAYGQVSSIYAHQGL
*************:**********************************************
COL MNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTENYTG
N315 MNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTENYTG
NCTC8325 MNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTENYTG
Newman MNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTENYTG
USA300_FPR3757 MNSIGHRKNILNDTFKILGVGVDFNDEKQPFWTENYTG
**************************************