PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003720000
• symbol^?: —
• synonym:
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • CcdC family protein
  • CcdC protein
  • membrane protein CcdC involved in cytochrome C biogenesis
  • Membrane protein involved in cytochrome C biogenesis
• strand^?: +
• coordinates^?: 4020878..4021345
• synteny block^?: BlockID0027860
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1380
N315:
SA1179
NCTC8325:
SAOUHSC_01340
Newman:
NWMN_1256
USA300_FPR3757:
SAUSA300_1241
04-02981:
SA2981_1299
08BA02176:
C248_1380
11819-97:
MS7_1303
6850:
RSAU_001226
71193:
ST398NM01_1346
ECT-R 2:
ECTR2_1203
ED133:
SAOV_1357
ED98:
SAAV_1325
HO 5096 0412:
SAEMRSA15_11910
JH1:
SaurJH1_1433
JH9:
SaurJH9_1406
JKD6008:
SAA6008_01310 (ccdC)
JKD6159:
SAA6159_01211 (ccdC)
LGA251:
SARLGA251_12530
M013:
M013TW_1292
MRSA252:
SAR1355
MSHR1132:
SAMSHR1132_11890
MSSA476:
SAS1284
Mu3:
SAHV_1333
Mu50:
SAV1344
MW2:
MW1231
RF122:
SAB1202
ST398:
SAPIG1346
T0131:
SAT0131_01415 (nasE)
TCH60:
HMPREF0772_11864
TW20:
SATW20_13460
USA300_TCH1516:
—
VC40:
SAVC_05960

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLYLIFSIIVALFMGTIVIVIRMKAQNYPVNEKKIVLPPFFMATGALMYVVPYFRLTGSE
  N315            MLYLIFSIIVALFMGTIVIVIRMKAQNYPVNEKKIVLPPFFMATGALMYVVPYFRLTGSE
  NCTC8325        -------------MGTIVIVIRMKAQNYPVNEKKIVLPPFFMATGALMYVVPYFRLTGSE
  Newman          MLYLIFSIIVALFMGTIVIVIRMKAQNYPVNEKKIVLPPFFMATGALMYVVPYFRLTGSE
  USA300_FPR3757  -------------MGTIVIVIRMKAQNYPVNEKKIVLPPFFMATGALMYVVPYFRLTGSE
                               ***********************************************
  
  COL             MLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILISLLIIRTVMKIFISNEIDP
  N315            MLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILISLLIIRTVMKIFISNEIDP
  NCTC8325        MLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILISLLIIRTVMKIFISNEIDP
  Newman          MLEAFIVGLLFSTDLIWTSRFEVKGTEIYMERSIAFPVILISLLIIRTVMKIFISNEIDP
  USA300_FPR3757  MLEAFIIGLLFSTVLIWTSRFEVKGTEIYMKRSKAFPVILISLLIIRTVMKIFISNEIDP
                  ******:****** ****************:** **************************
  
  COL             GELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN
  N315            GELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN
  NCTC8325        GELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN
  Newman          GELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN
  USA300_FPR3757  GELGGMFFLLAFCMIVPWRAAMLYKYKKLKKTLIN
                  ***********************************