PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003767000
• symbol^?: trpB
• synonym:
• description^?: tryptophan synthase subunit beta

  descriptions from strain specific annotations:

  • tryptophan synthase subunit beta
  • tryptophan synthase, beta subunit
  • Tryptophan synthase beta chain
  • pseudogene
• strand^?: +
• coordinates^?: 4064183..4065398
• synteny block^?: BlockID0028290
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1408 (trpB)
N315:
SA1204 (trpB)
NCTC8325:
SAOUHSC_01371
Newman:
NWMN_1284 (trpB)
USA300_FPR3757:
SAUSA300_1267 (trpB)
04-02981:
SA2981_1326 (trpB)
08BA02176:
C248_1410 (trpB)
11819-97:
MS7_1329 (trpB)
6850:
RSAU_001253 (trpB)
71193:
ST398NM01_1373
ECT-R 2:
ECTR2_1229 (trpB)
ED133:
SAOV_1382
ED98:
SAAV_1354 (trpB)
HO 5096 0412:
SAEMRSA15_12200 (trpB)
JH1:
SaurJH1_1462
JH9:
SaurJH9_1433
JKD6008:
SAA6008_01337 (trpB)
JKD6159:
SAA6159_01238 (trpB)
LGA251:
SARLGA251_12810 (trpB)
M013:
M013TW_1318
MRSA252:
SAR1385 (trpB)
MSHR1132:
SAMSHR1132_12150
MSSA476:
SAS1312
Mu3:
SAHV_1360 (trpB)
Mu50:
SAV1372 (trpB)
MW2:
MW1259 (trpB)
RF122:
SAB1227 (trpB)
ST398:
SAPIG1373 (trpB)
T0131:
SAT0131_01444 (hlgA)
TCH60:
HMPREF0772_11835 (trpB)
TW20:
SATW20_13720 (trpB)
USA300_TCH1516:
USA300HOU_1307 (trpB)
VC40:
SAVC_06110

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
  N315            MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
  NCTC8325        MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
  Newman          MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
  USA300_FPR3757  MNKQIQTEADELGFFGEYGGQYVPETLMPAIIELKKAYKEAKADPEFQRELEYYLSEYVG
                  ************************************************************
  
  COL             RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
  N315            RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
  NCTC8325        RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
  Newman          RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
  USA300_FPR3757  RATPLTYAASYTESLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKKLVAETGAG
                  ************************************************************
  
  COL             QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEDGQGTLSDAVNKA
  N315            QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEEGQGTLSDAVNKA
  NCTC8325        QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEDGQGTLSDAVNKA
  Newman          QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEDGQGTLSDAVNKA
  USA300_FPR3757  QHGVASATVAALFDMELVVFMGSEDIKRQQLNVFRMELLGAKVVAVEDGQGTLSDAVNKA
                  ***********************************************:************
  
  COL             LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
  N315            LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
  NCTC8325        LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
  Newman          LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
  USA300_FPR3757  LQYWVSHVDDTHYLLGSALGPDPFPTIVRDFQSVIGKEIKSQILKKEGRLPDAIVACIGG
                  ************************************************************
  
  COL             GSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQV
  N315            GSNAIGTFYPFIKDDVALYGVEAAGQGEDTDKHALAIGKGSPGVLHGTKMYLIQDEGGQV
  NCTC8325        GSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQV
  Newman          GSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQV
  USA300_FPR3757  GSNAIGTFYPFIKDDVALYGVEAAGQGDDTDKHALAIGKGSPGVLHGTKMYLIQDEDGQV
                  ***************************:****************************.***
  
  COL             QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
  N315            QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
  NCTC8325        QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
  Newman          QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
  USA300_FPR3757  QLAHSISAGLDYPGIGPEHSYYHDIGRVTFENASDTQAMNALINFTKHEGIIPAIESAHA
                  ************************************************************
  
  COL             LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMVERGLAND
  N315            LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMAERGLAND
  NCTC8325        LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMVERGLAND
  Newman          LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMVERGLAND
  USA300_FPR3757  LSYVERLAPTMSKEDIIVVTISGRGDKDMETIRQYMVERGLAND
                  ************************************.*******