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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003780000
- symbol?: —
- synonym:
- description?: hydrolase
- hydrolase
- hydrolase-like protein
- Cof-type HAD-IIB family hydrolase
- sugar phosphate hydrolase, putative
- cof family hydrolase
- cof-like hydrolase family protein
- HAD hydrolase
- haloacid dehalogenase-like hydrolase superfamily protein
- hydrolase-related protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4076418..4077189
- synteny block?: BlockID0028370
- occurrence?: in 85% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1331
08BA02176:
C248_1414
11819-97:
MS7_1334
6850:
RSAU_001257
71193:
ST398NM01_1377
ECT-R 2:
ECTR2_1234
ED133:
—
ED98:
SAAV_1359
HO 5096 0412:
SAEMRSA15_12410
JH1:
SaurJH1_1467
JH9:
SaurJH9_1438
JKD6008:
SAA6008_01341
JKD6159:
SAA6159_01244
LGA251:
—
M013:
—
MRSA252:
SAR1389
MSHR1132:
—
MSSA476:
SAS1318
Mu3:
SAHV_1365
Mu50:
SAV1377
MW2:
MW1265
RF122:
—
ST398:
SAPIG1377
T0131:
SAT0131_01448 (bioW)
TCH60:
HMPREF0772_11831
TW20:
SATW20_13760
USA300_TCH1516:
USA300HOU_1311
VC40:
SAVC_06130
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRFVFDIDGTLCFDGRLIDQTIIDTLLQLQHDGHELIFASARPIRDLLPVLPSVFHQHTL
N315 MRFVFDIDGTLCFDGRLIDQTIIDTLLQLQHDGHELIFASARPIRDLLPVLPSVFHQHTL
NCTC8325 MRFVFDIDGTLCFDGRLIDQTIIDTLLQLQHDGHELIFASARPIRDLLPVLPSVFHQHTL
Newman MRFVFDIDGTLCFDGRLIDQTIIDTLLQLQHDGHELIFASARPIRDLLPVLPSVFHQHTL
USA300_FPR3757 MRFVFDIDGTLCFDGRLIDQTIIDTLLQLQHDGHELIFASARPIRDLLPVLPSVFHQHTL
************************************************************
COL IGANGAMISQQSKISVIKPIHTDTYHHIFKIIQKNELDYIIDDDWNYAAQLDAENAIFER
N315 IGANGAMISQQSKISVIKPIHTDTYHHILKIIQKYELDYIIDDDWNYAAQLDAENAIFER
NCTC8325 IGANGAMISQQSKISVIKPIHTDTYHHIFKIIQKYELDYIIDDDWNYAAQLDAENAIFER
Newman IGANGAMISQQSKISVIKPIHTDTYHHIFKIIQKYELDYIIDDDWNYAAQLDAENAIFER
USA300_FPR3757 IGANGAMISQQSKISVIKPIHTDTYHHIFKIIQKYELDYIIDDDWNYAAQLDAENAIFER
****************************:***** *************************
COL LDPHKLASCIDVANIDTPIKIILLNIDPAQITTILDELDKYHQELEMIHHSNEYNIDITA
N315 LDPHKLASCIDVANIDTPIKIILLNIDPAQITTILDELNKYHQELEMIHHSNEYNIDITA
NCTC8325 LDPHKLASCIDVANIDTPIKIILLNIDPAQITTILDELDKYHQELEMIHHSNEYNIDITA
Newman LDPHKLASCIDVANIDTPIKIILLNIDPAQITTILDELDKYHQELEMIHHSNEYNIDITA
USA300_FPR3757 LDPHKLASCIDVANIDTPIKIILLNIDPAQITTILDELDKYHQELEMIHHSNEYNIDITA
**************************************:*********************
COL QNINKYTALQYIFDADVKYIAFGNDHNDIVMLQHASSGYIIGPSEAYTHAILKLDKIKHI
N315 QNINKYTALQYIFDADVKYIAFGNDHNDIFMLQHASSGYIIGPSEAYTHAILKLDKIKHI
NCTC8325 QNINKYTALQYIFDADVKYIAFGNDHNDIVMLQHASSGYIIGPSEAYTHAILKLDKIKHI
Newman QNINKYTALQYIFDADVKYIAFGNDHNDIVMLQHASSGYIIGPSEAYTHAILKLDKIKHI
USA300_FPR3757 QNINKYTALQYIFDADVKYIAFGNDHNDIVMLQHASSGYIIGPSEAYTHAILKLDKIKHI
*****************************.******************************
COL NNNAQAICKVLKSYK
N315 NNNTQAICKVLKSYK
NCTC8325 NNNAQAICKVLKSYK
Newman NNNAQAICKVLKSYK
USA300_FPR3757 NNNAQAICKVLKSYK
***:***********