PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003784000
• symbol^?: nikE
• synonym: opp2F
• description^?: ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • ABC transporter ATP-binding protein
  • oligopeptide ABC transporter ATP-binding protein
  • oligopeptide ABC transporter, ATP-binding protein, putative
  • oligopeptide permease, ATP-binding protein
  • oligopeptide transporter ATPase
  • peptide ABC transporter ATP-binding protein
  • ABC superfamily ATP binding cassette transporter, ABC protein
  • ABC transporter family protein
  • ABC-type dipeptide/oligopeptide/nickel transporter, ATPase component 2
  • ABC-type dipeptide/oligopeptide/nickel transport system, ATP-binding protein
  • dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
  • oligopeptide transporter ATPase subunit
  • Opp-2F
  • putative oligopeptide transporter ATPase
• strand^?: -
• coordinates^?: 4078045..4078781
• synteny block^?: BlockID0028410
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1414
N315:
SA1211 (opp-2F)
NCTC8325:
SAOUHSC_01377
Newman:
NWMN_1290
USA300_FPR3757:
SAUSA300_1273 (opp-2F)
04-02981:
SA2981_1333 (opp-2F)
08BA02176:
C248_1416
11819-97:
MS7_1336
6850:
RSAU_001259 (oppF3)
71193:
ST398NM01_1379
ECT-R 2:
ECTR2_1236
ED133:
SAOV_1388c
ED98:
SAAV_1361
HO 5096 0412:
SAEMRSA15_12430
JH1:
SaurJH1_1469
JH9:
SaurJH9_1440
JKD6008:
SAA6008_01343 (nikE)
JKD6159:
SAA6159_01246 (nikE)
LGA251:
SARLGA251_12960
M013:
M013TW_1324
MRSA252:
SAR1392
MSHR1132:
SAMSHR1132_12210
MSSA476:
SAS1320
Mu3:
SAHV_1367
Mu50:
SAV1379
MW2:
MW1267 (opp-2F)
RF122:
SAB1234c
ST398:
SAPIG1379
T0131:
SAT0131_01450
TCH60:
HMPREF0772_11829
TW20:
SATW20_13780
USA300_TCH1516:
USA300HOU_1313
VC40:
SAVC_06140

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY
  N315            MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY
  NCTC8325        MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY
  Newman          MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY
  USA300_FPR3757  MIELKHVTFGYNKKQMVLQDINITIPDGENVGILGESGCGKSTLASLVLGLFKPVKGEIY
                  ************************************************************
  
  COL             LSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQL
  N315            LSDNAVLTIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQL
  NCTC8325        LSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQL
  Newman          LSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQL
  USA300_FPR3757  LSDNAVLPIFQHPLTSFNPDWTIETSLKEALYYYRGLTDNTAQDQLLLQHLSTFELNAQL
                  *******.****************************************************
  
  COL             LTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH
  N315            LTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH
  NCTC8325        LTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH
  Newman          LTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH
  USA300_FPR3757  LTKLPSEVSGGQLQRFNVMRSLLAQPRVLICDEITSNLDVIAEQNVINILKAQTITNLNH
                  ************************************************************
  
  COL             FIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY
  N315            FIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQTFSY
  NCTC8325        FIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY
  Newman          FIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY
  USA300_FPR3757  FIVISHDLSVLQRLVNRIIVLKDGMIVDDFAIEELFNVDRHPYTKELVQAFSY
                  *************************************************:***