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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003786000
- symbol?: nikC
- synonym: opp2C
- description?: peptide ABC transporter permease
- peptide ABC transporter permease
- oligopeptide transporter permease
- ABC transporter permease
- oligopeptide ABC transporter, permease protein, putative
- ABC-type dipeptide/oligopeptide/nickel transport system, permease component
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane component family protein
- binding-protein-dependent transport systems inner membrane component
- dipeptide/oligopeptide/nickel ABC transporter permease
- nickel transport system permease protein
- oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
- oligopeptide ABC transporter membrane protein
- oligopeptide ABC transporter permease
- oligopeptide membrane permease
- oligopeptide transporter membrane permease domain
- putative oligopeptide transport system permease
- Putative oligopeptide transport system permease protein oppC2
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4080162..4081464
- synteny block?: BlockID0028430
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1335 (opp-2C)
08BA02176:
C248_1418
11819-97:
MS7_1338
6850:
RSAU_001261 (oppC3)
71193:
ST398NM01_1381
ECT-R 2:
ECTR2_1238
ED133:
SAOV_1390c
ED98:
SAAV_1363
HO 5096 0412:
SAEMRSA15_12450
JH1:
SaurJH1_1471
JH9:
SaurJH9_1442
JKD6008:
SAA6008_01345 (opp-2C)
JKD6159:
SAA6159_01248 (opp-2C)
LGA251:
SARLGA251_12980
M013:
M013TW_1326
MRSA252:
SAR1394
MSHR1132:
SAMSHR1132_12230
MSSA476:
SAS1322
Mu3:
SAHV_1369
Mu50:
SAV1381
MW2:
MW1269 (opp-2C)
RF122:
SAB1236c
ST398:
SAPIG1381
T0131:
SAT0131_01452
TCH60:
HMPREF0772_11827
TW20:
SATW20_13800
USA300_TCH1516:
USA300HOU_1315
VC40:
SAVC_06150
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MHKIFSKNNLIFFVFVAFIFVVIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRD
N315 MHKIFSKNNLIFFVFVAFIFVVIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRD
NCTC8325 MHKIFSKNNLIFFVFVAFIFVVIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRD
Newman MHKIFSKNNLIFFVFVAFIFVVIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRD
USA300_FPR3757 MHKIFSKNNLIFFVFVAFIFVVIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRD
************************************************************
COL LFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFII
N315 LFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFII
NCTC8325 LFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFII
Newman LFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFII
USA300_FPR3757 LFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFII
************************************************************
COL MIALASFFQPSLWNLVISITLIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIR
N315 MIALASFFQPSLWNLVISITVIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIR
NCTC8325 MIALASFFQPSLWNLVISITLIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIR
Newman MIALASFFQPSLWNLVISITLIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIR
USA300_FPR3757 MIALASFFQPSLWNLVISITLIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIR
********************:***************************************
COL HLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIML
N315 HLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIML
NCTC8325 HLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIML
Newman HLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIML
USA300_FPR3757 HLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIML
************************************************************
COL IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
N315 IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
NCTC8325 IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
Newman IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
USA300_FPR3757 IAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH
************************************