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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003803000
- symbol?: cvfB
- synonym:
- description?: virulence factor B
- virulence factor B
- putative virulence factor B
- RNA-binding virulence regulatory protein CvfB
- conserved virulence factor B
- poly(U) binding protein CvfB
- S1 RNA binding domain-containing protein
- S1 RNA binding domain protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4093163..4094065
- synteny block?: BlockID0028600
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1345
08BA02176:
C248_1430
11819-97:
MS7_1347 (cvfB)
6850:
RSAU_001270 (cvfB)
71193:
ST398NM01_1392
ECT-R 2:
ECTR2_1248
ED133:
SAOV_1400c
ED98:
SAAV_1373
HO 5096 0412:
SAEMRSA15_12540
JH1:
SaurJH1_1481
JH9:
SaurJH9_1452
JKD6008:
SAA6008_01355
JKD6159:
SAA6159_01257
LGA251:
SARLGA251_13070 (cvfB)
M013:
M013TW_1335
MRSA252:
SAR1403
MSHR1132:
SAMSHR1132_12320
MSSA476:
SAS1332
Mu3:
SAHV_1379
Mu50:
SAV1391
MW2:
MW1279
RF122:
SAB1246c
ST398:
SAPIG1392
T0131:
SAT0131_01464
TCH60:
HMPREF0772_11818
TW20:
SATW20_13900 (cvfB)
USA300_TCH1516:
USA300HOU_1326
VC40:
SAVC_06200
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MALDKDIVGSIEFLEVVGLQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPN
N315 MALDKDIVGSIEFLEVVGLQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPN
NCTC8325 MALDKDIVGSIEFLEVVGLQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPN
Newman MALDKDIVGSIEFLEVVGLQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPN
USA300_FPR3757 MALDKDIVGSIEFLEVVGLQGSTYLLKGPNGENVKLNQSEMNDDDELEVGEEYSFFIYPN
************************************************************
COL RSGELFATQNMPDITKDKYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQPG
N315 RSGELFATQNMPDITKDKYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQPG
NCTC8325 RSGELFATQNMPDITKDKYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQPG
Newman RSGELFATQNMPDITKDKYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQPG
USA300_FPR3757 RSGELFATQNMPDITKDKYDFAKVLKTDRDGARIDVGLPREVLVPWEDLPKVKSLWPQPG
************************************************************
COL DYLLVTLRIDRENHMYGRLASESVVENMFTPVHDDNLKNEVIEAKPYRVLRIGSFLLSES
N315 DHLLVTLRIDRENHMYGRLASESVVENMFTPVHDDNLKNEVIEAKPYRVLRIGSFLLSES
NCTC8325 DYLLVTLRIDRENHMYGRLASESVVENMFTPVHDDNLKNEVIEAKPYRVLRIGSFLLSES
Newman DYLLVTLRIDRENHMYGRLASESVVENMFTPVHDDNLKNEVIEAKPYRVLRIGSFLLSES
USA300_FPR3757 DYLLVTLRIDRENHMYGRLASESVVENMFTPVHDDNLKNEVIEAKPYRVLRIGSFLLSES
*:**********************************************************
COL GYKIFVHESERKAEPRLGESVQVRIIGHNDKGELNGSFLPLAHERLDDDGQVIFDLLVEY
N315 GYKIFVHESERKAEPRLGESVQVRIIGHNDKGELNGSFLPLAHERLDDDGQVIFDLLVEY
NCTC8325 GYKIFVHESERKAEPRLGESVQVRIIGHNDKGELNGSFLPLAHERLDDDGQVIFDLLVEY
Newman GYKIFVHESERKAEPRLGESVQVRIIGHNDKGELNGSFLPLAHERLDDDGQVIFDLLVEY
USA300_FPR3757 GYKIFVHESERKAEPRLGESVQVRIIGHNDKGELNGSFLPLAHERLDDDGQVIFDLLVEY
************************************************************
COL DGELPFWDKSSPEAIKEVFNMSKGSFKRAIGHLYKQKIINIETGKIALTKKGWSRMDSKE
N315 DGELPFWDKSSPEAIKEVFNMSKGSFKRAIGHLYKQKIINIETGKITLTKKGWSRIDSKE
NCTC8325 DGELPFWDKSSPEAIKEVFNMSKGSFKRAIGHLYKQKIINIETGKIALTKKGWSRMDSKE
Newman DGELPFWDKSSPEAIKEVFNMSKGSFKRAIGHLYKQKIINIETGKIALTKKGWSRMDSKE
USA300_FPR3757 DGELPFWDKSSPEAIKEVFNMSKGSFKRAIGHLYKQKIINIETGKIALTKKGWSRMDSKE
**********************************************:********:****