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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003954000
- symbol?: —
- synonym:
- description?: DUF1672 domain-containing protein
- DUF1672 domain-containing protein
- putative lipoprotein with DUF1672
- lipoprotein
- lipoprotein, putative
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4267250..4268964
- synteny block?: BlockID0030000
- occurrence?: in 88% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1442
08BA02176:
C248_1530
11819-97:
MS7_1507
6850:
RSAU_001358
71193:
ST398NM01_1556
ECT-R 2:
ECTR2_1337
ED133:
—
ED98:
SAAV_1474
HO 5096 0412:
—
JH1:
SaurJH1_1573
JH9:
SaurJH9_1542
JKD6008:
SAA6008_01460
JKD6159:
SAA6159_01419
LGA251:
—
M013:
M013TW_1433
MRSA252:
SAR1565
MSHR1132:
—
MSSA476:
SAS1427
Mu3:
SAHV_1474
Mu50:
SAV1486
MW2:
MW1375
RF122:
SAB1351c
ST398:
SAPIG1556
T0131:
SAT0131_01583
TCH60:
HMPREF0772_11651
TW20:
SATW20_14880
USA300_TCH1516:
USA300HOU_1492
VC40:
SAVC_06700
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
N315 MLKKAKLILIAVLVLSGCSTIENESKKDRNTETNTETKSVPEEMEASKYVGQGFQPPAEK
NCTC8325 --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
Newman MKKFIGSVLATTLILGGCSTMENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
USA300_FPR3757 --------------------MENESKKD----TKTETKSVPEEMEASKYVGQGFQPPAEK
:******* *:**************************
COL NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
N315 DAIEFAKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGDGVEVYVHCDDHDIVFNASIPF
NCTC8325 NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
Newman NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
USA300_FPR3757 NAIEFAKKHRKEFEKVGEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPL
:********:.:: * ***** **************..*********:**.******:*:
COL YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
N315 DKSIIDSDSSLRSEDKGDDMSTLVGTVLSGFEYRAHKEELDNLTEVLKEYKSKYKYTGYT
NCTC8325 YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
Newman YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
USA300_FPR3757 YKDAIHQKGSMRSNDNGDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFT
*. *....*:**:*:***** :************:**: *** :.:** :.**:***:*
COL KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
N315 ENAIMKTQNSGFRNEYYYLTAIPYTLDEYKRYFQPLIKEDDKSFRDGMRNSKKQLKDKSR
NCTC8325 KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
Newman KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
USA300_FPR3757 KEAINKTQNVGYKNEYFYITYSSRSLKEYRKYYEPLIRKNDKEFKEGMERARKEVNYAAN
::** **** *::***:*:* . :*.**::*::***:::**.*::**..::*::: :.
COL TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
N315 PYVVTTLFSTKDNFTKDNTIDEMIDFSEVLKKKKNIPHDLNVSLQISNKYINTKRPNYSK
NCTC8325 TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
Newman TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
USA300_FPR3757 TDAVATLFSTKKNFTKDNTVDDVIELSDKLYNLKNKPDKSTITIQIGKPTINTKKAFYDD
. .*:******.*******:*::*::*: * : ** *.. .:::**.: ****:. *..
COL NRPIEYGVHSKDE-----
N315 KEVIEVGVFNHEKANTND
NCTC8325 NRPIEYGVHSKDE-----
Newman NRPIEYGVHSKDE-----
USA300_FPR3757 NRPIEYGVHSKDE-----
:. ** **..:::