PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003960000
• symbol^?: —
• synonym:
• description^?: lipoprotein

  descriptions from strain specific annotations:

  • lipoprotein
  • putative lipoprotein
• strand^?: -
• coordinates^?: 4271557..4272780
• synteny block^?: BlockID0030060
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
SACOL1530
N315:
SA1321
NCTC8325:
SAOUHSC_01511
Newman:
NWMN_1395
USA300_FPR3757:
SAUSA300_1378
04-02981:
SA2981_1447
08BA02176:
—
11819-97:
MS7_1441
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_1480
HO 5096 0412:
—
JH1:
SaurJH1_1578
JH9:
SaurJH9_1547
JKD6008:
SAA6008_01457
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_1478
Mu50:
SAV1490
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_01580 (lpl7nm)
TCH60:
—
TW20:
SATW20_14850
USA300_TCH1516:
USA300HOU_1427
VC40:
SAVC_06685

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNNESKKD----TNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKV
  N315            MENESSKD--------TNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFAKKHRKEFEKV
  NCTC8325        MNNESKKDTNTETNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKV
  Newman          MNNESKKD----TNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKV
  USA300_FPR3757  MNNESKKD----TNTETNTETKSVPEEMEASKYVGQGFQPPAEKDAIEFVKKHRKEFEKV
                  *:***.**        *********************************.**********
  
  COL             GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
  N315            GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
  NCTC8325        GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
  Newman          GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
  USA300_FPR3757  GEQFFKDNFGLKVKATNVVGKDDGVEVYVHCEDHGIVFNASLPLYKDAIHQKGSMRSNDN
                  ************************************************************
  
  COL             GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEY
  N315            GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFFKENEKKYQYTGFTKEAINKTQNVGYQNEY
  NCTC8325        GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEY
  Newman          GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEY
  USA300_FPR3757  GDDMSMMVGTVLSGFEYRAQKEKYDNLYKFLKENEKQYQYTGFTKEAINKTQNVGYQNEY
                  ******************************:*****:***********************
  
  COL             FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNR
  N315            FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELDYTANSNTVATLFSTNDKKNR
  NCTC8325        FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNR
  Newman          FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNR
  USA300_FPR3757  FYITYLSRNLKEYRKYYEPLIHKNDKEFKEGMQRARKELNYTANTNTVATLFSTNDERNR
                  ***************************************:****:***********::**
  
  COL             KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
  N315            KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
  NCTC8325        KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
  Newman          KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
  USA300_FPR3757  KEKINNVIDLSEKIERTKDMPIKNTITTQLGNKLIGTKKARFDDKKVVSFGAFEDE
                  ********************************************************