PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004071000
• symbol^?: bfmBAB
• synonym:
• description^?: alpha-ketoacid dehydrogenase subunit beta

  descriptions from strain specific annotations:

  • alpha-ketoacid dehydrogenase subunit beta
  • 2-oxoisovalerate dehydrogenase, E1 component, beta subunit
  • 2-oxoisovalerate dehydrogenase, E1 component subunit beta
  • branched-chain alpha-keto acid dehydrogenase E1
  • Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit
  • 2-oxoisovalerate dehydrogenase (acylating) beta subunit
  • 2-oxoisovalerate dehydrogenase beta subunit
  • 2-oxoisovalerate dehydrogenase subunit beta
  • 2-oxoisovalerate dehydrogenase subunit beta (branched-chain alpha-keto acid dehydrogenase e1 component beta chain) (bckdhe1-beta)
  • acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta
  • transketolase, central region
• strand^?: -
• coordinates^?: 4352458..4353441
• synteny block^?: BlockID0031030
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1561
N315:
SA1347 (bfmBAB)
NCTC8325:
SAOUHSC_01612
Newman:
NWMN_1422
USA300_FPR3757:
SAUSA300_1465
04-02981:
SA2981_1475 (bfmBAB)
08BA02176:
C248_1559 (bfmBAB)
11819-97:
MS7_1534 (bfmBAB)
6850:
RSAU_001383
71193:
ST398NM01_1582
ECT-R 2:
ECTR2_1368
ED133:
SAOV_1517
ED98:
SAAV_1509
HO 5096 0412:
SAEMRSA15_14370 (bfmBAB)
JH1:
SaurJH1_1608
JH9:
SaurJH9_1575
JKD6008:
SAA6008_01486 (bfmBAB)
JKD6159:
SAA6159_01452 (bfmBAB)
LGA251:
SARLGA251_14230 (bfmBAB)
M013:
M013TW_1532
MRSA252:
SAR1594 (bfmBAB)
MSHR1132:
SAMSHR1132_13570
MSSA476:
SAS1455
Mu3:
SAHV_1504 (bfmBAB)
Mu50:
SAV1516 (bfmBAB)
MW2:
MW1469 (bfmBAB)
RF122:
SAB1389c
ST398:
SAPIG1582
T0131:
SAT0131_01610
TCH60:
HMPREF0772_11624 (acoB)
TW20:
SATW20_15130 (bfmBAB)
USA300_TCH1516:
USA300HOU_1518
VC40:
SAVC_06830

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAKLSYLEAIRQAQDLALQQNKDVFILGEDVGRKGGVFGTTQGLQQKYGEDRVIDTPLAE
  N315            MAKLSYLEAIRQAQDLALQQNKDVFILGEDVGKKGGVFGTTQGLQQQYGEDRVIDTPLAE
  NCTC8325        MAKLSYLEAIRQAQDLALQQNKDVFILGEDVGRKGGVFGTTQGLQQKYGEDRVIDTPLAE
  Newman          MAKLSYLEAIRQAQDLALQQNKDVFILGEDVGRKGGVFGTTQGLQQKYGEDRVIDTPLAE
  USA300_FPR3757  MAKLSYLEAIRQAQDLALQQNKDVFILGEDVGRKGGVFGTTQGLQQKYGEDRVIDTPLAE
                  ********************************:*************:*************
  
  COL             SNIVGTAIGAAMVGKRPIAEIQFADFILPATNQIISEAAKMRYRSNNDWQCPLTIRAPFG
  N315            SNIVGTAIGAAMVGKRPIAEIQFADFILPATNQIISEAAKMRYRSNNDWQCPLTIRAPFG
  NCTC8325        SNIVGTAIGAAMVGKRPIAEIQFADFILPATNQIISEAAKMRYRSNNDWQCPLTIRAPFG
  Newman          SNIVGTAIGAAMVGKRPIAEIQFADFILPATNQIISEAAKMRYRSNNDWQCPLTIRAPFG
  USA300_FPR3757  SNIVGTAIGAAMVGKRPIAEIQFADFILPATNQIISEAAKMRYRSNNDWQCPLTIRAPFG
                  ************************************************************
  
  COL             GGVHGGLYHSQSIESIFASSPGLTIVIPSTPYDAKGLLLSSIESNDPVLYFEHKKAYRFL
  N315            GGVHGGLYHSQSIESIFASSPGLTIVIPSTPYDAKGLLLSSIESNDPVLYFEHKKAYRFL
  NCTC8325        GGVHGGLYHSQSIESIFASSPGLTIVIPSTPYDAKGLLLSSIESNDPVLYFEHKKAYRFL
  Newman          GGVHGGLYHSQSIESIFASSPGLTIVIPSTPYDAKGLLLSSIESNDPVLYFEHKKAYRFL
  USA300_FPR3757  GGVHGGLYHSQSIESIFASSPGLTIVIPSTPYDAKGLLLSSIESNDPVLYFEHKKAYRFL
                  ************************************************************
  
  COL             KEEVPEEYYTVPLGKADVKREGEDLTVFCYGLMVNYCLQAADILAADGINVEVVDLRTVY
  N315            KEEVPEEYYTVPLGKADVKREGEDLTVFCYGLMVNYCLQAADILAADGINVEVVDLRTVY
  NCTC8325        KEEVPEEYYTVPLGKADVKREGEDLTVFCYGLMVNYCLQAADILAADGINVEVVDLRTVY
  Newman          KEEVPEEYYTVPLGKADVKREGEDLTVFCYGLMVNYCLQAADILAADGINVEVVDLRTVY
  USA300_FPR3757  KEEVPEEYYTVPLGKADVKREGEDLTVFCYGLMVNYCLQAADILAADGINVEVVDLRTVY
                  ************************************************************
  
  COL             PLDKETIIDRAKHTGKVLLVTEDNLEGSIMSEVSAIIAEHCLFDLDAPIMRLAAPDVPSM
  N315            PLDKETIIDRAKNTGKVLLVTEDNLEGSIMSEVSAIIAEHCLFDLDAPIMRLAAPDVPSM
  NCTC8325        PLDKETIIDRAKHTGKVLLVTEDNLEGSIMSEVSAIIAEHCLFDLDAPIMRLAAPDVPSM
  Newman          PLDKETIIDRAKHTGKVLLVTEDNLEGSIMSEVSAIIAEHCLFDLDAPIMRLAAPDVPSM
  USA300_FPR3757  PLDKETIIDRAKHTGKVLLVTEDNLEGSIMSEVSAIIAEHCLFDLDAPIMRLAAPDVPSM
                  ************:***********************************************
  
  COL             PFSPVLENEIMMNPEKILNKMRELAEF
  N315            PFSPVLENEIMMNPEKILNKMRELAEF
  NCTC8325        PFSPVLENEIMMNPEKILNKMRELAEF
  Newman          PFSPVLENEIMMNPEKILNKMRELAEF
  USA300_FPR3757  PFSPVLENEIMMNPEKILNKMRELAEF
                  ***************************