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Summary[edit | edit source]

  • pan ID?: SAUPAN004158000
  • symbol?: rpsU
  • synonym:
  • description?: 30S ribosomal protein S21

      descriptions from strain specific annotations:

    • 30S ribosomal protein S21
    • 30S ribosomal protein S21p
  • strand?: -
  • coordinates?: 4423660..4423836
  • synteny block?: BlockID0031880
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    SACOL1632 (rpsU)
    N315:
    SA1404 (rpsU)
    NCTC8325:
    Newman:
    NWMN_1478 (rpsU)
    USA300_FPR3757:
    04-02981:
    SA2981_1533 (rpsU)
    08BA02176:
    C248_1618 (rpsU)
    11819-97:
    MS7_1592 (rpsU)
    6850:
    RSAU_001440 (rpsU)
    71193:
    ST398NM01_1641
    ECT-R 2:
    ECTR2_1425 (rpsU)
    ED133:
    SAOV_1575 (rpsU)
    ED98:
    SAAV_1567 (rpsU)
    HO 5096 0412:
    SAEMRSA15_14950 (rpsU)
    JH1:
    SaurJH1_1667 (rpsU)
    JH9:
    SaurJH9_1633 (rpsU)
    JKD6008:
    SAA6008_01545 (rpsU)
    JKD6159:
    SAA6159_01510 (rpsU)
    LGA251:
    SARLGA251_14810 (rpsU)
    M013:
    M013TW_1590
    MRSA252:
    SAR1652 (rpsU)
    MSHR1132:
    SAMSHR1132_14150
    MSSA476:
    SAS1513 (rpsU)
    Mu3:
    SAHV_1562 (rpsU)
    Mu50:
    SAV1575 (rpsU)
    MW2:
    MW1527 (rpsU)
    RF122:
    SAB1447c (rpsU)
    ST398:
    SAPIG1641 (rpsU)
    T0131:
    SAT0131_01671 (folK)
    TCH60:
    HMPREF0772_11565 (rpsU)
    TW20:
    SATW20_15710 (rpsU)
    USA300_TCH1516:
    USA300HOU_1576 (rpsU)
    VC40:
    SAVC_07125 (rpsU)

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
    N315            MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
    NCTC8325        MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
    Newman          MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
    USA300_FPR3757  MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
                    **********************************************************