PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004191000
• symbol^?: —
• synonym:
• description^?: enterotoxin

  descriptions from strain specific annotations:

  • enterotoxin
  • enterotoxin family protein
  • enterotoxin type A
  • enterotoxin type A, putative
  • putative enterotoxin type A
  • pseudogene
  • staphylococcal/Streptococcal toxin, OB-fold domain protein
  • toxin OB-fold domain-containing protein
• strand^?: -
• coordinates^?: 4448573..4449264
• synteny block^?: BlockID0032210
• occurrence^?: in 64% of 33 strains

⊟Orthologs

COL:
SACOL1657
N315:
SA1430
NCTC8325:
SAOUHSC_01705
Newman:
NWMN_1503
USA300_FPR3757:
SAUSA300_1559
04-02981:
SA2981_1560
08BA02176:
—
11819-97:
MS7_1618 (entA)
6850:
RSAU_001464
71193:
—
ECT-R 2:
ECTR2_1451
ED133:
—
ED98:
SAAV_1593
HO 5096 0412:
—
JH1:
SaurJH1_1693
JH9:
SaurJH9_1659
JKD6008:
SAA6008_01572
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1538
Mu3:
SAHV_1589
Mu50:
SAV1602
MW2:
MW1552
RF122:
—
ST398:
—
T0131:
SAT0131_01698 (rplK)
TCH60:
—
TW20:
SATW20_15960
USA300_TCH1516:
USA300HOU_1603
VC40:
SAVC_07260

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             -----------------------------------MLEGIFTNSASAIEYSDLHHKSKFD
  N315            MSQPVYHLCLALKCKLIIVLGEFEVKYLTGFILILLLEGIFTNSASAIEYSDLHHKSKFD
  NCTC8325        -----------------------------------MLEGIFTNSASAIEYSDLHHKSKFD
  Newman          -----------------------------------MLEGIFTNSASAIEYSDLHHKSKFD
  USA300_FPR3757  -----------------------------------MLEGIFTNSASAIEYSDLHHKSKFD
                                                     :************************
  
  COL             SKRLSNAKMSFINPTQLENKNTNDRLLKHDLLFHDMFVNDDWKKDFKVEFENEALSKKFI
  N315            SKRLSNAKMSFINPTQLENKNTNDRLLKHDLLFHDMFVNVASKKDFKVEFENEALSKKFI
  NCTC8325        SKRLSNAKMSFINPTQLENKNTNDRLLKHDLLFHDMFVNDDWKKDFKVEFENEALSKKFI
  Newman          SKRLSNAKMSFINPTQLENKNTNDRLLKHDLLFHDMFVNDDWKKDFKVEFENEALSKKFI
  USA300_FPR3757  SKRLSNAKMSFINPTQLENKNTNDRLLKHDLLFHDMFVNDDWKKDFKVEFENEALSKKFI
                  ***************************************   ******************
  
  COL             NKDIDIFAGNYGYGCHGGATNKTQCSYGGVTLSDNNKYDDYKNIPCNLWIDGHQTEIELT
  N315            NKNIDIYAGSYSYECHGGATNKTQCSYGGVTLSDNNK-----------------------
  NCTC8325        NKDIDIFAGNYGYGCHGGATNKTQCSYGGVTLSDNNKYDDYKNIPCNLWIDGHQTEIELT
  Newman          NKDIDIFAGNYGYGCHGGATNKTQCSYGGVTLSDNNKYDDYKNIPCNLWIDGHQTEIELT
  USA300_FPR3757  NKDIDIFAGNYGYGCHGGATNKTQCSYGGVTLSDNNKYDDYKNIPCNLWIDGHQTEIELT
                  **:***:**.*.* ***********************                       
  
  COL             AVKTKKKIVTIQELEVQLRNYLNEKYKLYEQGGDIVKGYVKYYNDDEQNVEYDFYNLNGE
  N315            ------------------------------------------------------------
  NCTC8325        AVKTKKKIVTIQELEVQLRNYLNEKYKLYEQGGDIVKGYVKYYNDDEQNVEYDFYNLNGE
  Newman          AVKTKKKIVTIQELEVQLRNYLNEKYKLYEQGGDIVKGYVKYYNDDEQNVEYDFYNLNGE
  USA300_FPR3757  AVKTKKKIVTIQELEVQLRNYLNEKYKLYEQGGDIVKGYVKYYNDDEQNVEYDFYNLNGE
                                                                              
  
  COL             YGREVLKMYADNKTINSDKLHLDIYLFKS
  N315            -----------------------------
  NCTC8325        YGREVLKMYADNKTINSDKLHLDIYLFKS
  Newman          YGREVLKMYADNKTINSDKLHLDIYLFKS
  USA300_FPR3757  YGREVLKMYADNKTINSDKLHLDIYLFKS