Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN004458000
- symbol?: ribD
- synonym:
- description?: riboflavin biosynthesis protein RibD
- riboflavin biosynthesis protein RibD
- bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
- bifunctional riboflavin biosynthesis protein
- riboflavin biosynthesis protein
- riboflavin specific deaminase
- bifunctional pyrimidine reductase / riboflavin biosynthesis protein
- diaminohydroxyphosphoribosylaminopyrimidine deaminase
- Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4705060..4706064
- synteny block?: BlockID0034550
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1726 (ribD)
08BA02176:
C248_1816 (ribD)
11819-97:
MS7_1774 (ribD)
6850:
RSAU_001625 (ribD)
71193:
ST398NM01_1822
ECT-R 2:
ECTR2_1608 (ribD)
ED133:
SAOV_1754 (ribD)
ED98:
SAAV_1780 (ribD)
HO 5096 0412:
SAEMRSA15_16770 (ribD)
JH1:
SaurJH1_1858
JH9:
SaurJH9_1823
JKD6008:
SAA6008_01743 (ribD)
JKD6159:
SAA6159_01691 (ribD)
LGA251:
SARLGA251_16580 (ribD)
M013:
M013TW_1784
MRSA252:
SAR1853 (ribD)
MSHR1132:
SAMSHR1132_16180
MSSA476:
SAS1694
Mu3:
SAHV_1756 (ribD)
Mu50:
SAV1771 (ribD)
MW2:
MW1711 (ribD)
RF122:
SAB1628c (ribD)
ST398:
SAPIG1822 (ribD)
T0131:
SAT0131_01885
TCH60:
HMPREF0772_11383 (ribD)
TW20:
SATW20_17610 (ribD)
USA300_TCH1516:
USA300HOU_1760 (ribD)
VC40:
SAVC_08060
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQN
N315 MSQFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQN
NCTC8325 -------------MVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQN
Newman MSQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQN
USA300_FPR3757 -------------MVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQN
*****************:*****************************
COL AEGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDETLRAHGIEVEC
N315 AEGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDETLRAHGIEVEC
NCTC8325 AEGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDETLRAHGIEVEC
Newman AEGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDETLRAHGIEVEC
USA300_FPR3757 AEGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDETLRAHGIEVEC
************************************************************
COL VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH
N315 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH
NCTC8325 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH
Newman VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH
USA300_FPR3757 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH
************************************************************
COL RHDAVLTGRRTVELDDPQYTTRIQDGKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN
N315 RHDAVLTGRRTVELDDPQYTTRIQDGKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN
NCTC8325 RHDAVLTGRRTVELDDPQYTTRIQDGKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN
Newman RHDAVLTGRRTVELDDPQYTTRIQDGKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN
USA300_FPR3757 RHDAVLTGRRTVELDDPQYTTRIQDGKNPIKVILSKSGNIHFNQQIYQDESTPIWIYTEN
************************************************************
COL PNLTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYY
N315 PNLTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYY
NCTC8325 PNLTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYY
Newman PNLTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYY
USA300_FPR3757 PNLTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYY
****:*******************************************************
COL APKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK
N315 APKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK
NCTC8325 APKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK
Newman APKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK
USA300_FPR3757 APKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK
***********************************************