PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004570000
• symbol^?: —
• synonym:
• description^?: beta-lactamase

  descriptions from strain specific annotations:

  • beta-lactamase
  • DUF4888 domain-containing protein
  • ear protein
  • putative beta-lactamase
• strand^?: +
• coordinates^?: 4804018..4804584
• synteny block^?: BlockID0035580
• occurrence^?: in 70% of 33 strains

⊟Orthologs

COL:
SACOL1870
N315:
SA1633
NCTC8325:
SAOUHSC_01944
Newman:
NWMN_1708
USA300_FPR3757:
SAUSA300_1759
04-02981:
SA2981_1770
08BA02176:
—
11819-97:
MS7_1815
6850:
RSAU_001671
71193:
—
ECT-R 2:
ECTR2_1646
ED133:
SAOV_1799
ED98:
SAAV_1822
HO 5096 0412:
—
JH1:
SaurJH1_1900
JH9:
SaurJH9_1866
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_16980
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1738
Mu3:
SAHV_1800
Mu50:
SAV1815
MW2:
MW1757
RF122:
SAB1675
ST398:
—
T0131:
SAT0131_01934
TCH60:
—
TW20:
SATW20_18120
USA300_TCH1516:
USA300HOU_1807
VC40:
SAVC_08310

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNTKFLGKTLVASALVLTTLGTGLHSSYLGLDTNKVVKTAKAEEKMTDGQLWKKVKDSLH
  N315            MNTKFLGKTLVASALVLTTLGTGLHSSYLGLNTNKVVKTAKAEEKMTNGQLWKKVKDSLI
  NCTC8325        MNTKFLGKTLVASALVLTTLGTGLHSSYLGLDTNKVVKTAKAEEKMTDGQLWKKVKDSLH
  Newman          MNTKFLGKTLVASALVLTTLGTGLHSSYLGLDTNKVVKTAKAEEKMTDGQLWKKVKDSLH
  USA300_FPR3757  MNTKFLGKTLVASALVLTTLGTGLHSSYLGLDTNKVVKTAKAEEKMTDGQLWKKVKDSLH
                  *******************************:***************:*********** 
  
  COL             DSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENV-YD
  N315            DSNIISGNENEEITVTYVNKTGYSSSVSAYGNNNDDFSSTPSNFSKLKEIDLKKDNVPSD
  NCTC8325        DSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENV-YD
  Newman          DSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENV-YD
  USA300_FPR3757  DSDIILSNEYETINVTYLLSNGYSSSVSAPGNDDGGHLTQSIDFKGLKQIDLTKENV-YD
                  **:** .** * *.***: ..******** **::... : . :*. **:***.*:**  *
  
  COL             DFNKKLDAKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSS----SPVSGKVGEGVTSGGEN
  N315            DFNTTVSGEDSWKTLTSKLKEKGLVTDGQTVTIHCNDKSDNTKSSVSGKVGADLTSGNGT
  NCTC8325        DFNKKLDAKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSS----SPVSGKVGEGVTSGGEN
  Newman          DFNKKLDAKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSS----SPVSGKVGEGVTSGGEN
  USA300_FPR3757  DFNKKLDAKNTWNSLTEKLKGLGLLQNGQKVSIYSSDSS----SPVSGKVGEGVTSGGEN
                  ***..:..:::*::**.***  **: :**.*:*:..*.*    *.****** .:***. .
  
  COL             TLTKRFINKITID
  N315            TFKKRFIDKITID
  NCTC8325        TLTKRFINKITID
  Newman          TLTKCFINKITID
  USA300_FPR3757  TLTKRFINKITID
                  *:.* **:*****