PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004574000
• symbol^?: epiF
• synonym:
• description^?: bacitracin ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • bacitracin ABC transporter ATP-binding protein
  • ABC transporter
  • epidermin immunity protein F
  • lantibiotic epidermin immunity protein F
  • lantibiotic immunity protein F
  • epidermin ABC transporter ATP-binding protein
  • lantibiotic protection ABC transporter ATP-binding subunit
  • lantibiotic transport ATP-binding protein
  • transport protein
• strand^?: -
• coordinates^?: 4806511..4807203
• synteny block^?: BlockID0035600
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL1873 (epiF)
N315:
—
NCTC8325:
SAOUHSC_01948
Newman:
NWMN_1711 (bsaF)
USA300_FPR3757:
SAUSA300_1762 (epiF)
04-02981:
—
08BA02176:
—
11819-97:
MS7_1818
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_1802
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_17010
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1741
Mu3:
—
Mu50:
—
MW2:
MW1760 (bsaF)
RF122:
SAB1678c
ST398:
—
T0131:
SAT0131_01939
TCH60:
—
TW20:
SATW20_18150
USA300_TCH1516:
USA300HOU_1810 (epiF)
VC40:
SAVC_08325

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             --MAKLVTENISKRFKNQDVLKHINITLENNEVYGLLGINGAGKTTLMKIICGILQQDSG
  NCTC8325        --MAKLVTENISKRFKNQDVLKHINITLENNEVYGLLGINGAGKTTLMKIICGILQQDSG
  Newman          MIMAKLVTENISKRFKNQDVLKHINITLENNEVYGLLGINGAGKTTLMKIICGILQQDSG
  USA300_FPR3757  --MAKLVTENISKRFKNQDVLKHINITLENNEVYGLLGINGAGKTTLMKIICGILQQDSG
                    **********************************************************
  
  COL             EIKLDNRPMTRNDLHKVGSLIETPATYNHLSAQDNLKIVCLNESVDFSEINSVLSLVNLN
  NCTC8325        EIKLDNRPMTRNDLHKVGSLIETPATYNHLSAQDNLKIVCLNESVDFSEINSVLSLVNLN
  Newman          EIKLDNRPMTRNDLHKVGSLIETPATYNHLSAQDNLKIVCLNESVDFSEINSVLSLVNLN
  USA300_FPR3757  EIKLDNRPMTRNDLHKVGSLIETPATYNHLSAQDNLKIVCLNESVDFSEINSVLSLVNLN
                  ************************************************************
  
  COL             VDKKKKVKDFSLGMKQRLGIAMALIKKPEILVLDEPSNGLDPYGIQELRELLKLLTEQGT
  NCTC8325        VDKKKKVKDFSLGMKQRLGIAMALIKKPEILVLDEPSNGLDPYGIQELRELLKLLTEQGT
  Newman          VDKKKKVKDFSLGMKQRLGIAMALIKKPEILVLDEPSNGLDPYGIQELRELLKLLTEQGT
  USA300_FPR3757  VDKKKKVKDFSLGMKQRLGIAMALIKKPEILVLDEPSNGLDPYGIQELRELLKLLTEQGT
                  ************************************************************
  
  COL             SIIISSHILSEIQVLADHIGIIHEGELKYQQRNNKDENLEEIFFKITKGDYK
  NCTC8325        SIIISSHILSEIQVLADHIGIIHEGELKYQQRNNKDENLEEIFFKITKGDYK
  Newman          SIIISSHILSEIQVLADHIGIIHEGELKYQQRNNKDENLEEIFFKITKGDYK
  USA300_FPR3757  SIIISSHILSEIQVLADHIGIIHEGELKYQQRNNKDENLEEIFFKITKGDYK
                  ****************************************************