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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004601000
- symbol?: —
- synonym:
- description?: pseudogene
- strand?: +
- coordinates?: 4836447..4836975
- synteny block?: BlockID0035780
- occurrence?: in 39% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
—
11819-97:
MS7_1826
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
SaurJH1_1906
JH9:
SaurJH9_1873
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1750
Mu3:
—
Mu50:
—
MW2:
MW1769
RF122:
—
ST398:
—
T0131:
SAT0131_01948
TCH60:
—
TW20:
SATW20_18230
USA300_TCH1516:
USA300HOU_1819
VC40:
SAVC_08370
⊟Genome Viewer[edit | edit source]
| COL | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MVVYASHLSFLLFSNKKVLKINAYTGTDMAKLDLNSLDDEHVKLLINELKYPETHIDVNE
NCTC8325 MVVYASHLSFLLFSNKKVLKINAYTGTDMAKLDLNSLDDEHVKLLINELKYPETHIDVNE
Newman MVVYASHLSFLLFSNKKVLKINAYTGTDMAKLDLNSLDDEHVKLLINELKYPETHIDVNE
USA300_FPR3757 ----------------------------MAKLDLNSLDDEHVKLLINELKYPETHIDVNE
********************************
COL LKTIVASRINERQEIISFKLGIKYLLTIKRGNIEKDRFSISIIFKDTYHTLVRIDINGGT
NCTC8325 LKTIVASRINERQEIISFKLGIKYLLTIKRGNIEKDRFSISIIFKDTYHTLVRIDINGGT
Newman LKTIVASRINERQEIISFKLGIKYLLTIKRGNIEKDRFSISIIFKDTYHTLVRIDINGGT
USA300_FPR3757 LKTIVASRINERQEIISFKLGIKYLLTIKRGNIEKDRFSISIIFKDTYHTLVRIDINGGT
************************************************************
COL HDNPDGTIAPKSHIHIYNDKYDKKDRFAYEINLKDFPDIYNLYNVYMSFLEYNNIKDLE
NCTC8325 HDNPDGTIAPKSHIHIYNDKYDKKDRFAYEINLKDFPDIYNLYNVYMSFLEYNNIKDLE
Newman HDNPDGTIAPKSHIHIYNDKYDKKDRFAYEINLKDFPDIYNLYNVYMSFLEYNNIKDLE
USA300_FPR3757 HDNPDGTIAPKSHIHIYNDKYDKKDRFAYEINLKDFPDIYNLYNVYMSFLEYNNIKDLE
***********************************************************