PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004604000
• symbol^?: —
• synonym:
• description^?: DUF1829 domain-containing protein

  descriptions from strain specific annotations:

  • DUF1829 domain-containing protein
  • hypothetical protein with DUF1828 and 1829
  • Prophage protein
  • pseudogene
• strand^?: +
• coordinates^?: 4837012..4837654
• synteny block^?: BlockID0035800
• occurrence^?: in 64% of 33 strains

⊟Orthologs

COL:
SACOL1883
N315:
SA1639
NCTC8325:
SAOUHSC_01957
Newman:
NWMN_1721
USA300_FPR3757:
SAUSA300_1771
04-02981:
SA2981_1776
08BA02176:
—
11819-97:
MS7_1827
6850:
RSAU_001676
71193:
—
ECT-R 2:
ECTR2_1654
ED133:
—
ED98:
SAAV_1830
HO 5096 0412:
—
JH1:
SaurJH1_1907
JH9:
SaurJH9_1874
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
M013TW_1828
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1751
Mu3:
SAHV_1806
Mu50:
SAV1821
MW2:
MW1770
RF122:
—
ST398:
—
T0131:
SAT0131_01949
TCH60:
—
TW20:
SATW20_18240
USA300_TCH1516:
USA300HOU_1820
VC40:
SAVC_08375

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTTFDAKKLKKEYLDWYNQTLEFSNLSNNVVRIDTPFKDNSLDNLIIYALYDQSRDMITL
  N315            MTTFDAKKLKKEYLDWYNQILEFSNLSNNSVKIDTPFKDNSLDNLKIYALYDQSRDMITL
  NCTC8325        MTTFDAKKLKKEYLDWYNQTLEFSNLSNNVVRIDTPFKDNSLDNLIIYALYDQSRDMITL
  Newman          MTTFDAKKLKKEYLDWYNQTLEFSNLSNNVVRIDTPFKDNSLDNLIIYALYDQSRDMITL
  USA300_FPR3757  MTTFDAKKLKKEYLDWYNQTLEFSNLSNNVVRIDTPFKDNSLDNLIIYALYDQSRDMITL
                  ******************* ********* *:************* **************
  
  COL             TDDGYTIFDLENNGISLNKSKKRKKIFEEHLSAYGIKYNDKTHEIFVQTNFKNFNKSKHN
  N315            TDDGYTIFGLENNGVSINKFKKRKKIFEEHLSAYGIKYNDKTHEIFVQTNFKNFNKSKHN
  NCTC8325        TDDGYTIFDLENNGISLNKSKKRKKIFEEHLSAYGIKYNDKTHEIFVQTNFKNFNKSKHN
  Newman          TDDGYTIFDLENNGISLNKSKKRKKIFEEHLSAYGIKYNDKTHEIFVQTNFKNFNKSKHN
  USA300_FPR3757  TDDGYTIFDLENNGISLNKSKKRKKIFEEHLSAYGIKYNDKTHEIFVQTNFKNFNKSKHN
                  ********.*****:*:** ****************************************
  
  COL             LLQCLIFVNDMYLLSNPKSQNIFTEDVANKLDEHNIYYGRDLPIIGSSGVVHNFDFFISA
  N315            LLQCLIFVNDMYLLSNPKSQNIFTEDVANKLDEHNIYYGRDIPIIGSSGVVHNFDFFISA
  NCTC8325        LLQCLIFVNDMYLLSNPKSQNIFTEDVANKLDEHNIYYGRDLPIIGSSGVVHNFDFFISA
  Newman          LLQCLIFVNDMYLLSNPKSQNIFTEDVANKLDEHNIYYGRDLPIIGSSGVVHNFDFFISA
  USA300_FPR3757  LLQCLIFVNDMYLLSNPKSQNIFTEDVANKLDEHNIYYGRDLPIIGSSGVVHNFDFFISA
                  *****************************************:******************
  
  COL             KKNQKEKFINAISNPNNSMIIKSKITDAMQAKKIKRHRQNEFIFILNDSKKEINEHNKNL
  N315            KKNQKEKFINVFSNPNNSMIIKSKITDAMQAKKIKRHRQNEFIFILNDSKKEINEHNKNL
  NCTC8325        KKNQKEKFINAISNPNNSMIIKSKITDAMQAKKIKRHRQNEFIFILNDSKKEINEHNKNL
  Newman          KKNQKEKFINAISNPNNSMIIKSKITDAMQAKKIKRHRQNEFIFILNDSKKEINEHNKNL
  USA300_FPR3757  KKNQKEKFINAISNPNNSMIIKSKITDAMQAKK---------------------------
                  **********.:*********************                           
  
  COL             LHENYISTIDYSELDEKIGLLI
  N315            LHENYISTIDYSELDEKIGLLI
  NCTC8325        LHENYISTIDYSELDEKIGLLI
  Newman          LHENYISTIDYSELDEKIGLLI
  USA300_FPR3757  ----------------------