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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004783000
- symbol?: —
- synonym:
- description?: RNA pseudouridine synthase
- RNA pseudouridine synthase
- ribosomal large subunit pseudouridine synthase D
- RNA pseudouridylate synthase
- RluA family pseudouridine synthase
- ribosomal large subunit pseudouridine synthase, RluD subfamily
- ribosomal large subunitpseudouridine synthase D-like protein
- RluA, Pseudouridylate synthase, 23S RNA-specific
- RluA, Pseudouridylate synthases, 23S RNA-specific
- RNA pseudouridylate synthase family protein
- truncated ribosomal large subunit pseudouridine synthase D, RluD subfamily
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4992994..4993428
- synteny block?: BlockID0037150
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1806 (yhcT)
08BA02176:
C248_1893
11819-97:
MS7_1855
6850:
RSAU_001709
71193:
ST398NM01_1916
ECT-R 2:
ECTR2_1692
ED133:
SAOV_1847
ED98:
SAAV_1869
HO 5096 0412:
SAEMRSA15_17550
JH1:
SaurJH1_1938
JH9:
SaurJH9_1904
JKD6008:
SAA6008_01807 (rluA)
JKD6159:
SAA6159_01778 (rluA)
LGA251:
SARLGA251_17330
M013:
M013TW_1856
MRSA252:
SAR1941
MSHR1132:
SAMSHR1132_16960
MSSA476:
SAS1771
Mu3:
SAHV_1835
Mu50:
SAV1850
MW2:
MW1791
RF122:
SAB1783
ST398:
SAPIG1916
T0131:
SAT0131_01970
TCH60:
HMPREF0772_11294
TW20:
SATW20_18440
USA300_TCH1516:
USA300HOU_1844 (rluA2)
VC40:
SAVC_08486
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPT
N315 MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPT
NCTC8325 MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPT
Newman MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPT
USA300_FPR3757 MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPARLMDKVHTGDDVFVPT
************************************************************
COL IDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEP
N315 IDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEP
NCTC8325 IDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEP
Newman IDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEP
USA300_FPR3757 IDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKESNTLMNHVIYTIDSDYVEP
************************************************************
COL IHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDK
N315 IHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDK
NCTC8325 IHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDK
Newman IHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDK
USA300_FPR3757 IHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKANVKALLPLKPQTIDMPIGKDK
************************************************************
COL FHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPL
N315 FHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPL
NCTC8325 FHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPL
Newman FHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPL
USA300_FPR3757 FHSNKRRVSPTGQRAITHILTSKMIKEAVCQLEIKLDTGRTHQIRVHLAEIGHPVIGDPL
************************************************************
COL YGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
N315 YGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
NCTC8325 YGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
Newman YGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
USA300_FPR3757 YGDSTLRQLELESYKIEFVHPLTKEVISVSLDD
*********************************