PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004796000
• symbol^?: tnp3
• synonym:
• description^?: ISL3 family transposase IS1181

  descriptions from strain specific annotations:

  • ISL3 family transposase IS1181
  • IS1181, transposase
  • IS1181 transposase
  • ISL3 family transposase
  • transposase
  • transposase for IS1181
  • transposase, IS204/IS1001/IS1096/IS1165 family protein
  • transposase family protein
  • Transposase for Insertion sequence IS1181
  • transposase IS204/IS1001/IS1096/IS1165 family protein
• strand^?: +
• coordinates^?: 5004434..5005672
• synteny block^?: BlockID0037280
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
SACOL1918
N315:
SA1677 (tnp)
NCTC8325:
SAOUHSC_01993
Newman:
NWMN_1752
USA300_FPR3757:
SAUSA300_1810
04-02981:
SA2981_1816
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_1702
ED133:
—
ED98:
SAAV_1879
HO 5096 0412:
—
JH1:
SaurJH1_1948
JH9:
SaurJH9_1914
JKD6008:
SAA6008_01817
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_1845 (tnp)
Mu50:
SAV1860 (tnp)
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_01980 (fbp)
TCH60:
—
TW20:
SATW20_18540
USA300_TCH1516:
USA300HOU_1855
VC40:
SAVC_08550

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ------------MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYC
  N315            ------------MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYC
  Newman          ------------MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYC
  USA300_FPR3757  MTKPKLKETSAPMCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYC
                              ************************************************
  
  COL             CGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFI
  N315            CGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFI
  Newman          CGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFI
  USA300_FPR3757  CGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFI
                  ************************************************************
  
  COL             SRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEF
  N315            SRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEF
  Newman          SRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEF
  USA300_FPR3757  SRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEF
                  ************************************************************
  
  COL             KSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPY
  N315            KSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPY
  Newman          KSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPY
  USA300_FPR3757  KSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPY
                  ************************************************************
  
  COL             VRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPDYTIFKNNWKVLLMD
  N315            VRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPNYTIFKNNWKVLLMD
  Newman          VRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPDYTIFKNNWKVLLMD
  USA300_FPR3757  VRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPDYTIFKNNWKVLLMD
                  *********************************************:**************
  
  COL             TSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRHSYELVQGLRKDLRLCNWPKFINR
  N315            TSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRRSYELVQGLRKDLRLCNWPKFINR
  Newman          TSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRHSYELVQGLRKDLRLCNWPKFINR
  USA300_FPR3757  TSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRHSYELVQGLRKDLRLCNWPKFINR
                  ************************************:***********************
  
  COL             LNSVSKKSVSKGVWKAVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRN
  N315            LNSVSKKSVSKGVWKVVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRN
  Newman          LNSVSKKSVSKGVWKAVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRN
  USA300_FPR3757  LNSVSKKSVSKGVWKAVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRN
                  ***************.********************************************
  
  COL             FNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
  N315            FNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
  Newman          FNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
  USA300_FPR3757  FNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
                  *******************************