PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004907000
• symbol^?: —
• synonym:
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • aromatic acid exporter family protein
  • Fusaric acid resistance protein-like membrane protein, putative
  • Integral membrane protein
  • protein in map 5'region
• strand^?: +
• coordinates^?: 5099926..5100912
• synteny block^?: BlockID0038130
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL1947
N315:
SA1705
NCTC8325:
SAOUHSC_02103
Newman:
—
USA300_FPR3757:
SAUSA300_1870
04-02981:
SA2981_1845
08BA02176:
C248_1961
11819-97:
MS7_1924
6850:
RSAU_001776
71193:
ST398NM01_1982
ECT-R 2:
ECTR2_1760
ED133:
SAOV_1988
ED98:
SAAV_1954
HO 5096 0412:
SAEMRSA15_17960
JH1:
SaurJH1_1977
JH9:
SaurJH9_1943
JKD6008:
SAA6008_01909
JKD6159:
SAA6159_01820
LGA251:
SARLGA251_17710
M013:
M013TW_1925
MRSA252:
SAR1980
MSHR1132:
SAMSHR1132_17340
MSSA476:
SAS1811
Mu3:
SAHV_1874
Mu50:
SAV1889
MW2:
MW1829
RF122:
SAB1821
ST398:
SAPIG1982
T0131:
SAT0131_02014
TCH60:
HMPREF0772_11254
TW20:
SATW20_18830
USA300_TCH1516:
USA300HOU_1885
VC40:
SAVC_08700

⊟Genome Viewer

COL
N315
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRR
  N315            MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRR
  NCTC8325        MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRR
  USA300_FPR3757  MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRR
                  ************************************************************
  
  COL             LPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGI
  N315            LPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGI
  NCTC8325        LPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGI
  USA300_FPR3757  LPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGI
                  ************************************************************
  
  COL             HDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQEL
  N315            HDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQEL
  NCTC8325        HDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQEL
  USA300_FPR3757  HDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQEL
                  ************************************************************
  
  COL             ILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRL
  N315            ILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRL
  NCTC8325        ILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRL
  USA300_FPR3757  ILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRL
                  ************************************************************
  
  COL             FITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKAL
  N315            FITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGTFKREDDSVETLRSTIKAL
  NCTC8325        FITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKAL
  USA300_FPR3757  FITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKAL
                  *****************************************:******************
  
  COL             EISGENQIKSHILYEVLMIYRLLDSRYA
  N315            EISGENQIKSHILYEVLMIYRLLDSRYA
  NCTC8325        EISGENQIKSHILYEVLMIYRLLDSRYA
  USA300_FPR3757  EISGENQIKSHILYEVLMIYRLLDSRYA
                  ****************************