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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005122000
- symbol?: —
- synonym:
- description?: Phage protein
- strand?: +
- coordinates?: 5263199..5265990
- synteny block?: BlockID0039750
- occurrence?: in 27% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1956
08BA02176:
—
11819-97:
—
6850:
—
71193:
ST398NM01_2955
ECT-R 2:
ECTR2_1866
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR2097
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_19920
USA300_TCH1516:
USA300HOU_2001
VC40:
—
⊟Genome Viewer[edit | edit source]
| N315 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MTDEAKFVLLQLYSIYLGRIDEGMSKHSASYFGSDESSFNAFFLGFNFEDYIDAVLELKH
Newman MTDEAKFVLLQLYSIYLDRIDEGMSKRSASYFGSDESSFNAFFLGFNFEDYIDAVLELKH
USA300_FPR3757 MTNEAKFVLLQLYSIYLDRIDEGMSKRSASYFGSDESSFNAFFLDFNFEDYIDAVLELKH
**:**************.********:*****************.***************
N315 RDFVIASAEDGGFLEMALSREGIAYSESESKKDYKTLMGLIRDLKKLII
Newman RDFVIASAEDGGFLEMALSREGIAYSESESKKDYKTLMGLIRDLKKLII
USA300_FPR3757 RDFVIASAEDGGFLEMALSREGIAYSESESKKDYKTLMDLIRDLKKLII
**************************************.**********