PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005343000
• symbol^?: —
• synonym:
• description^?: membrane protein

  descriptions from strain specific annotations:

  • membrane protein
  • PH domain-containing protein
  • membrane flanked domain protein
  • membrane-flanked domain-containing protein
  • membrane spanning protein
  • probable membrane protein
• strand^?: -
• coordinates^?: 5517218..5517703
• synteny block^?: BlockID0041400
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2062
N315:
SA1876
NCTC8325:
SAOUHSC_02307
Newman:
NWMN_1977
USA300_FPR3757:
SAUSA300_2029
04-02981:
SA2981_2013 (ydbS)
08BA02176:
C248_2084
11819-97:
MS7_2089
6850:
RSAU_001912
71193:
ST398NM01_2113
ECT-R 2:
ECTR2_1928
ED133:
SAOV_2114c
ED98:
SAAV_2125
HO 5096 0412:
SAEMRSA15_19820
JH1:
SaurJH1_2147
JH9:
SaurJH9_2109
JKD6008:
SAA6008_02111
JKD6159:
SAA6159_01987
LGA251:
SARLGA251_18750
M013:
M013TW_2031
MRSA252:
SAR2160
MSHR1132:
SAMSHR1132_18970
MSSA476:
SAS1977
Mu3:
SAHV_2057
Mu50:
SAV2072
MW2:
MW1996
RF122:
SAB1957c
ST398:
SAPIG2113
T0131:
SAT0131_02229
TCH60:
HMPREF0772_11123
TW20:
SATW20_22120
USA300_TCH1516:
USA300HOU_2067
VC40:
SAVC_09245

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MMRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIIL
  N315            -MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNNISIVSSVIIIL
  NCTC8325        -MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIIL
  Newman          -MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIIL
  USA300_FPR3757  -MRDYNFMSPHAKKVMRLSAVLFWIPIALVLLIAFNILNWLFWEILDNHLSIVSSVIIIL
                   ***********************************************::**********
  
  COL             LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
  N315            LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
  NCTC8325        LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
  Newman          LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
  USA300_FPR3757  LVAVFTLVIAPVYRYKHCRYAFEKHHLRVRNGILFLDEKVIPYFRIQNIDIDVGPIMRRY
                  ************************************************************
  
  COL             RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
  N315            RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
  NCTC8325        RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
  Newman          RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
  USA300_FPR3757  RLATLTLYTAGGQAEIELIDRSEARRLKRWLNNERHLENNKNEE
                  ********************************************