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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005432000
- symbol?: pdp
- synonym: deoA
- description?: pyrimidine-nucleoside phosphorylase
- pyrimidine-nucleoside phosphorylase
- putative pyrimidine-nucleoside phosphorylase
- pyrimidine-nucleoside phosphorylase (pynp)
- thymidine phosphorylase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5590507..5591808
- synteny block?: BlockID0042270
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2076 (pdp)
08BA02176:
C248_2152 (pyn)
11819-97:
MS7_2154 (pdp)
6850:
RSAU_001974 (pynP)
71193:
ST398NM01_2178
ECT-R 2:
ECTR2_1992 (pdp)
ED133:
SAOV_2176c (pyn)
ED98:
SAAV_2191 (pdp)
HO 5096 0412:
SAEMRSA15_20440 (pyn)
JH1:
SaurJH1_2210
JH9:
SaurJH9_2172
JKD6008:
SAA6008_02174 (pdp)
JKD6159:
SAA6159_02050 (pdp)
LGA251:
SARLGA251_19370 (pyn)
M013:
M013TW_2096
MRSA252:
SAR2224 (pyn)
MSHR1132:
SAMSHR1132_19590
MSSA476:
SAS2039
Mu3:
SAHV_2120 (pdp)
Mu50:
SAV2136 (pdp)
MW2:
MW2060 (pdp)
RF122:
SAB2020c (pyn)
ST398:
SAPIG2178
T0131:
SAT0131_02300
TCH60:
HMPREF0772_11054 (pdp)
TW20:
SATW20_22740 (pyn)
USA300_TCH1516:
USA300HOU_2125 (pdp)
VC40:
SAVC_09555
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
N315 MRMIDIIEKKRDGHTLTTEEINFFIDGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
NCTC8325 MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
Newman MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
USA300_FPR3757 MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
*************************.**********************************
COL AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
N315 AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
NCTC8325 AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
Newman AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
USA300_FPR3757 AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
************************************************************
COL IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
N315 IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
NCTC8325 IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
Newman IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
USA300_FPR3757 IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
************************************************************
COL ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
N315 ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
NCTC8325 ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
Newman ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
USA300_FPR3757 ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
************************************************************
COL QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
N315 QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
NCTC8325 QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
Newman QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
USA300_FPR3757 QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
************************************************************
COL NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
N315 NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
NCTC8325 NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
Newman NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
USA300_FPR3757 NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
************************************************************
COL LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
N315 LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
NCTC8325 LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
Newman LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
USA300_FPR3757 LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
************************************************************
COL VVSPTLIHKIITE
N315 VVSPTLIHKIITE
NCTC8325 VVSPTLIHKIITE
Newman VVSPTLIHKIITE
USA300_FPR3757 VVSPTLIHKIITE
*************