PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005459000
• symbol^?: —
• synonym:
• description^?: SAP domain-containing protein

  descriptions from strain specific annotations:

  • SAP domain-containing protein
  • pseudogene
  • putative DNA/RNA binding protein
  • SAP domain protein
• strand^?: -
• coordinates^?: 5614563..5615285
• synteny block^?: BlockID0042480
• occurrence^?: in 36% of 33 strains

⊟Orthologs

COL:
SACOL2142
N315:
—
NCTC8325:
SAOUHSC_02393
Newman:
NWMN_2053
USA300_FPR3757:
SAUSA300_2101
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
RSAU_001988
71193:
—
ECT-R 2:
—
ED133:
SAOV_2188c
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_02188
JKD6159:
—
LGA251:
—
M013:
M013TW_2109
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02314 (prfC)
TCH60:
—
TW20:
SATW20_22870
USA300_TCH1516:
USA300HOU_2140
VC40:
SAVC_09625

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIY
  NCTC8325        MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIY
  Newman          MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIY
  USA300_FPR3757  MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIY
                  ************************************************************
  
  COL             KKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEY
  NCTC8325        KKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPIKKGEEILKKTEY
  Newman          KKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEY
  USA300_FPR3757  KKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEY
                  *********************************************** ************
  
  COL             LTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELN
  NCTC8325        LTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELN
  Newman          LTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELN
  USA300_FPR3757  LTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELN
                  ************************************************************
  
  COL             MLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRF
  NCTC8325        MLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRF
  Newman          MLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRF
  USA300_FPR3757  MLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRF
                  ************************************************************
  
  COL             INSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSN
  NCTC8325        INSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSN
  Newman          INSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSN
  USA300_FPR3757  INSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSN
                  ************************************************************
  
  COL             TLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVL
  NCTC8325        TLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVL
  Newman          TLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVL
  USA300_FPR3757  TLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVL
                  ************************************************************
  
  COL             DDDSLDILIQNQKYGNEF
  NCTC8325        DDDSLDILIQNQKYGNEF
  Newman          DDDSLDILIQNQKYGNEF
  USA300_FPR3757  DDDSLDILIQNQKYGNEF
                  ******************